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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7QFQ | 13947 | 2023-12-09 | 2021-12-06 | 3.6 | 3.83 | 3.58 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 12.93 | 0.00 | 2.177 | 8.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.65 | 0.70 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10659 | 1291 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8KG8 | 37213 | 2023-12-09 | 2023-08-17 | 4.23 | 6.03 | 4.25 | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.46 | 0.00 | 1.997 | 13.72 | 0.01 | 4.1 | 95.9 | 0.0 | 0.19 | 0.84 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63829 | 7950 | 25 | 25 | 17 | 0 | 0 | logfile |
✘ | 7WoB | 32647 | 2023-12-16 | 2022-01-21 | 3.25 | 2.88 | — | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 9.46 | 0.00 | 2.243 | 7.02 | 4.57 | 5.0 | 95.0 | 0.0 | -3.68 | 0.85 | 0.77 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35134 | 4476 | 12 | 0 | 38 | 0 | 0 | logfile |
✘ | 7o85 | 12761 | 2023-12-14 | 2021-04-14 | 3.3 | 3.50 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.51 | 0.00 | 1.470 | 7.44 | 0.00 | 3.3 | 96.7 | 0.0 | -0.25 | 0.71 | 0.75 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28525 | 3843 | 28 | 0 | 14 | 0 | 0 | logfile |
✘ | 7X6A | 33019 | 2023-12-15 | 2022-03-07 | 3.5 | 3.86 | — | 3.8 | 0.002 | 0.52 | 0.0 | 0.04 | 14.04 | 0.00 | 1.981 | 7.25 | 0.06 | 6.2 | 93.5 | 0.4 | -1.29 | 0.76 | 0.78 | 1.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30879 | 3969 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-12-07 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-12-09 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U5Z | 20659 | 2023-12-13 | 2019-08-28 | 3.5 | 3.66 | — | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 9.08 | 0.00 | 2.194 | 6.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.58 | 0.49 | 0.58 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24606 | 3174 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7o4L | 12722 | 2023-12-16 | 2021-04-06 | 3.4 | 3.17 | 3.35 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 14.10 | 0.00 | 2.001 | 4.13 | 0.00 | 2.3 | 97.7 | 0.0 | 2.39 | 0.69 | 0.73 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35159 | 4330 | 25 | 20 | 15 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2023-12-08 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GVC | 34290 | 2023-12-08 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7ZJE | 14746 | 2023-12-11 | 2022-04-10 | 3.12 | 3.70 | 3.28 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 11.99 | 0.00 | 2.254 | 7.29 | 0.19 | 8.3 | 91.1 | 0.5 | 0.64 | 0.66 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19284 | 2380 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V87 | 31792 | 2023-12-08 | 2021-08-22 | 3.3 | 3.93 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.05 | 14.56 | 0.00 | 2.167 | 6.58 | 0.00 | 5.4 | 94.6 | 0.0 | -0.21 | 0.79 | 0.84 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6617 | 797 | 6 | 0 | 12 | 0 | 0 | logfile |
✘ | 7UML | 26603 | 2023-12-10 | 2022-04-07 | 3.5 | 3.77 | 3.85 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.49 | 0.00 | 2.114 | 7.56 | 0.00 | 2.0 | 97.4 | 0.6 | -2.75 | 0.66 | 0.69 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13227 | 812 | 7 | 13 | 0 | 0 | 6477 | logfile |
✘ | 8C06 | 16355 | 2023-12-13 | 2022-12-16 | 2.7 | 2.32 | 2.57 | 2.7 | 0.003 | 0.76 | 0.0 | 0.05 | 13.59 | 0.01 | 2.333 | 2.28 | 0.00 | 5.5 | 94.5 | 0.0 | -1.51 | 0.67 | 0.75 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25324 | 3298 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 7oF2 | 12867 | 2023-12-17 | 2021-05-04 | 2.7 | 3.20 | 2.66 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 18.33 | 0.01 | 1.840 | 4.36 | 0.01 | 3.1 | 96.9 | 0.0 | 1.20 | 0.89 | 0.89 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101195 | 8560 | 64 | 1466 | 91 | 0 | 0 | logfile |
✘ | 8EGS | 28129 | 2023-12-15 | 2022-09-13 | 3.92 | 4.06 | 3.83 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.97 | 0.00 | 0.357 | 27.78 | 0.35 | 3.7 | 96.3 | 0.0 | -0.21 | 0.78 | 0.80 | 1.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30696 | 3756 | 18 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V69 | 31739 | 2023-12-09 | 2021-08-20 | 3.4 | 2.24 | — | 2.0 | 0.003 | 0.65 | 0.0 | 0.04 | 12.64 | 0.00 | 2.096 | 13.28 | 0.00 | 2.9 | 97.1 | 0.0 | -2.02 | 0.68 | 0.64 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8539 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VX4 | 32168 | 2023-12-08 | 2021-11-12 | 3.9 | 4.09 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 8.88 | 0.00 | 2.082 | 7.58 | 0.14 | 0.9 | 99.0 | 0.1 | -2.27 | 0.58 | 0.69 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6493 | 791 | 4 | 0 | 6 | 0 | 0 | logfile |