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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7ZGK | 14708 | 2023-12-10 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-12-07 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YVS | 34137 | 2023-12-15 | 2022-08-19 | 2.8 | 3.06 | 2.90 | 3.0 | 0.004 | 0.60 | 0.0 | 0.05 | 13.86 | 0.00 | 2.173 | 6.15 | 0.98 | 4.9 | 95.1 | 0.0 | -0.49 | 0.77 | 0.88 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30593 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 7U9X | 26409 | 2023-12-14 | 2022-03-11 | 2.58 | 2.84 | — | 1.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.38 | 0.00 | 2.080 | 9.25 | 0.11 | 2.3 | 97.7 | 0.0 | 1.30 | 0.87 | 0.83 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138588 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6TDW | 10469 | 2023-12-10 | 2019-11-10 | 3.8 | 4.05 | 3.54 | 4.0 | 0.007 | 0.84 | 0.0 | 0.08 | 13.71 | 0.01 | 2.078 | 4.92 | 0.15 | 7.2 | 92.8 | 0.0 | -1.91 | 0.70 | 0.78 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12997 | 841 | 7 | 0 | 0 | 0 | 6561 | logfile |
✘ | 7R48 | 14287 | 2023-12-11 | 2022-02-08 | 2.3 | 2.31 | — | 2.3 | 0.008 | 0.85 | 0.0 | 0.85 | 18.97 | 0.01 | 1.924 | 2.56 | 1.24 | 2.1 | 97.9 | 0.0 | 0.80 | 0.74 | 0.91 | 6.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69247 | 8118 | 115 | 0 | 55 | 2124 | 0 | logfile |
✘ | 6o90 | 0660 | 2023-12-14 | 2019-03-12 | 3.49 | 3.96 | — | 3.5 | 0.007 | 1.04 | 0.0 | 0.05 | 21.95 | 0.01 | 2.125 | 5.34 | 0.46 | 13.8 | 85.9 | 0.3 | -4.68 | 0.86 | 0.82 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138532 | 5232 | 53 | 4547 | 4 | 0 | 0 | logfile |
✘ | 7W3K | 32283 | 2023-12-08 | 2021-11-25 | 3.6 | 4.78 | — | 3.0 | 0.004 | 0.82 | 0.0 | 0.05 | 14.42 | 0.01 | 1.743 | 5.88 | 0.18 | 6.0 | 93.9 | 0.1 | -1.19 | 0.80 | 0.74 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110657 | 14090 | 53 | 0 | 5 | 0 | 0 | logfile |
✘ | 8DDQ | 27338 | 2023-12-15 | 2022-06-18 | 2.7 | 2.93 | 2.76 | 2.9 | 0.015 | 0.96 | 0.0 | 0.07 | 12.33 | 0.00 | 2.231 | 4.92 | 1.61 | 3.4 | 96.6 | 0.0 | 0.95 | 0.77 | 0.85 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31842 | 3848 | 12 | 0 | 78 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2023-12-07 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MBQ | 23741 | 2023-12-15 | 2021-04-01 | 2.3 | 3.00 | — | 2.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.96 | 0.01 | 2.246 | 6.69 | 0.58 | 3.9 | 96.0 | 0.1 | 1.80 | 0.80 | 0.88 | 3.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30616 | 3984 | 12 | 0 | 20 | 16 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-12-08 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 6WU9 | 21907 | 2023-12-14 | 2020-05-04 | 2.9 | 2.24 | — | 2.7 | 0.011 | 1.15 | 0.0 | 0.06 | 22.78 | 0.01 | 1.989 | 5.73 | 16.81 | 10.7 | 88.9 | 0.3 | -3.84 | 0.70 | 0.84 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 82295 | 2697 | 30 | 2855 | 3 | 0 | 0 | logfile |
✘ | 7UA1 | 26412 | 2023-12-15 | 2022-03-11 | 2.99 | 3.02 | — | 1.9 | 0.003 | 0.62 | 0.0 | 0.04 | 14.48 | 0.00 | 1.785 | 8.77 | 0.29 | 3.3 | 96.6 | 0.1 | 1.20 | 0.85 | 0.80 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138680 | 17324 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6Y5R | 10703 | 2023-12-10 | 2020-02-25 | 3.76 | 3.87 | 3.73 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 11.39 | 0.00 | 2.147 | 7.90 | 0.07 | 4.4 | 95.6 | 0.0 | -2.26 | 0.68 | 0.85 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13592 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 6XP5 | 22284 | 2023-12-12 | 2020-07-08 | 4.2 | 4.73 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 14.32 | 0.00 | 2.131 | 14.90 | 0.27 | 15.9 | 83.2 | 0.9 | -5.23 | 0.79 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21065 | 2707 | 15 | 0 | 221 | 0 | 0 | logfile |
✘ | 6RER | 4854 | 2023-12-16 | 2019-04-12 | 2.9 | 3.02 | 3.05 | 3.0 | 0.006 | 0.88 | 0.0 | 0.05 | 14.41 | 0.01 | 2.219 | 5.41 | 0.17 | 4.3 | 95.6 | 0.1 | -3.68 | 0.66 | 0.82 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✘ | 7V9A | 31813 | 2023-12-11 | 2021-08-24 | 3.94 | 3.46 | — | 3.4 | 0.002 | 0.58 | 0.0 | 0.03 | 18.68 | 0.00 | 2.260 | 6.87 | 0.00 | 5.2 | 94.8 | 0.0 | -4.05 | 0.66 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16876 | 1723 | 10 | 146 | 0 | 0 | 0 | logfile |
✘ | 8E44 | 27879 | 2023-12-09 | 2022-08-17 | 2.53 | 3.06 | 2.75 | 2.9 | 0.005 | 0.41 | 0.0 | 0.04 | 22.34 | 0.02 | 1.946 | 2.19 | 0.11 | 4.6 | 95.4 | 0.0 | 0.86 | 0.73 | 0.91 | 4.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115856 | 1179 | 11 | 3016 | 1 | 0 | 41883 | logfile |
✘ | 7T4K | 25678 | 2023-12-08 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |