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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7WYB | 32890 | 2023-12-08 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ETU | 28599 | 2023-12-14 | 2022-10-17 | 2.8 | 2.33 | 2.89 | 2.1 | 0.005 | 0.92 | 2.0 | 0.05 | 17.82 | 0.01 | 1.580 | 5.60 | 0.06 | 3.5 | 96.5 | 0.0 | -1.69 | 0.73 | 0.79 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28670 | 3656 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 8UQ4 | 42460 | 2023-12-14 | 2023-10-23 | 3.64 | 4.02 | — | 2.1 | 0.003 | 0.75 | 0.0 | 0.04 | 13.89 | 0.01 | 2.104 | 15.24 | 0.24 | 3.3 | 96.6 | 0.1 | 0.41 | 0.89 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2023-12-07 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 6XZ7 | 10655 | 2023-12-15 | 2020-02-03 | 2.1 | 2.05 | 2.12 | 2.1 | 0.010 | 0.84 | 1.0 | 0.05 | 22.59 | 0.04 | 1.564 | 6.31 | 3.26 | 2.8 | 96.8 | 0.4 | -2.20 | 0.41 | 0.69 | 5.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94915 | 3351 | 45 | 3169 | 179 | 528 | 0 | logfile |
✘ | 7XTQ | 33452 | 2023-12-08 | 2022-05-17 | 3.2 | 2.29 | 3.30 | 2.1 | 0.004 | 0.75 | 0.0 | 0.05 | 12.54 | 0.01 | 2.192 | 5.84 | 0.00 | 3.1 | 96.9 | 0.0 | -0.37 | 0.73 | 0.74 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8010 | 1027 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-12-11 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-12-07 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7W0M | 32244 | 2023-12-09 | 2021-11-18 | 3.71 | 2.51 | 3.74 | 2.2 | 0.005 | 0.81 | 0.0 | 0.05 | 13.45 | 0.00 | 2.230 | 11.46 | 0.00 | 5.6 | 94.4 | 0.0 | -1.90 | 0.73 | 0.74 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8929 | 1134 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8UXE | 42761 | 2023-12-15 | 2023-11-09 | 3.53 | 3.86 | — | 2.2 | 0.004 | 0.74 | 0.0 | 0.04 | 15.07 | 0.01 | 2.079 | 13.47 | 0.79 | 3.1 | 96.8 | 0.1 | 0.78 | 0.84 | 0.82 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138692 | 17324 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7NJK | 12377 | 2023-12-13 | 2021-02-17 | 2.52 | 2.49 | — | 2.2 | 0.004 | 0.51 | 0.0 | 0.04 | 14.88 | 0.00 | 2.061 | 4.73 | 0.00 | 2.4 | 97.6 | 0.1 | 1.64 | 0.85 | 0.87 | 4.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74650 | 4934 | 31 | 0 | 11 | 16 | 37359 | logfile |
✘ | 7WCM | 32424 | 2023-12-08 | 2021-12-20 | 2.33 | 2.14 | — | 2.2 | 0.005 | 0.70 | 0.0 | 0.16 | 14.14 | 0.00 | 2.281 | 3.66 | 0.00 | 2.5 | 97.5 | 0.0 | 1.05 | 0.64 | 0.84 | 4.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8232 | 1047 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7WZ1 | 32901 | 2023-12-13 | 2022-02-16 | 3.4 | 2.58 | — | 2.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.69 | 0.00 | 2.212 | 7.59 | 5.40 | 7.6 | 92.4 | 0.0 | -4.14 | 0.74 | 0.73 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24467 | 3092 | 6 | 0 | 28 | 0 | 0 | logfile |
✘ | 7R45 | 14272 | 2023-12-11 | 2022-02-08 | 2.4 | 2.37 | — | 2.3 | 0.008 | 0.84 | 0.0 | 0.85 | 18.82 | 0.01 | 1.801 | 2.78 | 1.20 | 2.3 | 97.7 | 0.0 | 0.76 | 0.72 | 0.90 | 5.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68195 | 8098 | 115 | 0 | 52 | 1334 | 0 | logfile |
✘ | 7Z18 | 14444 | 2023-12-17 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.45 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✘ | 8AoX | 15555 | 2023-12-14 | 2022-08-08 | 2.8 | 2.28 | 2.75 | 2.3 | 0.005 | 0.73 | 1.0 | 0.04 | 16.82 | 0.00 | 1.792 | 12.98 | 1.25 | 1.3 | 98.7 | 0.0 | -1.25 | 0.64 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87816 | 10368 | 72 | 0 | 48 | 4848 | 0 | logfile |
✘ | 7P7J | 13237 | 2023-12-17 | 2021-07-19 | 2.7 | 2.61 | — | 2.3 | 0.005 | 0.77 | 0.0 | 1.47 | 15.31 | 0.01 | 2.212 | 4.92 | 1.25 | 2.4 | 97.5 | 0.0 | -0.28 | 0.91 | 0.90 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37448 | 4719 | 24 | 0 | 28 | 0 | 0 | logfile |
✘ | 7R48 | 14287 | 2023-12-11 | 2022-02-08 | 2.3 | 2.31 | — | 2.3 | 0.008 | 0.85 | 0.0 | 0.85 | 18.97 | 0.01 | 1.924 | 2.56 | 1.24 | 2.1 | 97.9 | 0.0 | 0.80 | 0.74 | 0.91 | 6.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69247 | 8118 | 115 | 0 | 55 | 2124 | 0 | logfile |
✘ | 7o0W | 12681 | 2023-12-08 | 2021-03-27 | 2.47 | 2.42 | — | 2.3 | 0.018 | 4.34 | 0.0 | 0.06 | 22.62 | 0.01 | 2.010 | 1.98 | 0.28 | 1.4 | 98.6 | 0.0 | 1.25 | 0.82 | 0.86 | 5.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56476 | 5076 | 236 | 0 | 320 | 406 | 0 | logfile |
✘ | 7UVZ | 26821 | 2023-12-14 | 2022-05-02 | 2.21 | 2.55 | — | 2.3 | 0.010 | 0.65 | 1.0 | 0.04 | 22.46 | 0.02 | 1.876 | 4.65 | 2.03 | 2.1 | 97.7 | 0.2 | 0.93 | 0.92 | 0.93 | 4.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138943 | 5512 | 59 | 4453 | 13 | 5 | 0 | logfile |