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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7SP8 | 25368 | 2023-12-08 | 2021-11-02 | 2.7 | 2.98 | — | 2.9 | 0.008 | 0.77 | 0.0 | 0.05 | 14.94 | 0.00 | 2.204 | 5.45 | 0.16 | 1.5 | 98.5 | 0.0 | 2.53 | 0.72 | 0.82 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6090 | 742 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7WYB | 32890 | 2023-12-08 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZH5 | 11214 | 2023-12-16 | 2020-06-21 | 2.7 | 3.69 | — | 3.3 | 0.007 | 0.73 | 0.0 | 0.04 | 18.44 | 0.00 | 2.015 | 8.51 | 12.67 | 1.1 | 98.9 | 0.0 | -2.77 | 0.85 | 0.86 | 1.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34408 | 4272 | 35 | 0 | 16 | 0 | 0 | logfile |
✘ | 7AHE | 11784 | 2023-12-09 | 2020-09-24 | 4.1 | 4.22 | 4.11 | 4.1 | 0.009 | 1.23 | 0.0 | 0.09 | 12.90 | 0.00 | 2.205 | 16.70 | 0.45 | 9.6 | 90.4 | 0.0 | -5.40 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10060 | 1308 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7XEo | 33157 | 2023-12-12 | 2022-03-31 | 2.89 | 3.27 | 3.13 | 3.3 | 0.003 | 0.70 | 4.0 | 0.05 | 12.94 | 0.00 | 2.214 | 13.56 | 0.74 | 4.3 | 94.7 | 1.0 | 0.03 | 0.75 | 0.82 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19980 | 2456 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E4T | 30987 | 2023-12-12 | 2021-02-15 | 3.0 | 3.26 | 3.08 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 14.09 | 0.00 | 2.278 | 6.50 | 1.01 | 1.1 | 98.9 | 0.0 | 0.77 | 0.50 | 0.68 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 2656 | 8 | 0 | 24 | 0 | 0 | logfile |
✘ | 7V69 | 31739 | 2023-12-09 | 2021-08-20 | 3.4 | 2.24 | — | 2.0 | 0.003 | 0.65 | 0.0 | 0.04 | 12.64 | 0.00 | 2.096 | 13.28 | 0.00 | 2.9 | 97.1 | 0.0 | -2.02 | 0.68 | 0.64 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8539 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SQ8 | 25379 | 2023-12-10 | 2021-11-04 | 2.598 | 2.10 | — | 2.5 | 0.004 | 0.55 | 0.0 | 0.04 | 13.32 | 0.00 | 2.199 | 3.68 | 0.00 | 3.3 | 96.7 | 0.0 | 1.93 | 0.64 | 0.86 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15117 | 1852 | 13 | 0 | 9 | 8 | 0 | logfile |
✘ | 7WGX | 32491 | 2023-12-13 | 2021-12-29 | 3.5 | 3.82 | — | 3.8 | 0.017 | 1.20 | 0.0 | 0.05 | 13.51 | 0.00 | 2.256 | 4.67 | 0.00 | 3.9 | 95.6 | 0.5 | -0.06 | 0.79 | 0.83 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25629 | 3165 | 21 | 0 | 60 | 0 | 0 | logfile |
✘ | 7B5P | 12043 | 2023-12-12 | 2020-12-05 | 3.2 | 3.34 | — | 3.3 | 0.009 | 1.00 | 1.0 | 0.06 | 13.44 | 0.00 | 1.894 | 24.69 | 1.78 | 8.9 | 89.6 | 1.4 | -2.84 | 0.70 | 0.83 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22527 | 3013 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UML | 26603 | 2023-12-10 | 2022-04-07 | 3.5 | 3.77 | 3.85 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.49 | 0.00 | 2.114 | 7.56 | 0.00 | 2.0 | 97.4 | 0.6 | -2.75 | 0.66 | 0.69 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13227 | 812 | 7 | 13 | 0 | 0 | 6477 | logfile |
✘ | 6XLC | 22239 | 2023-12-09 | 2020-06-28 | 3.66 | 3.01 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 12.92 | 0.00 | 2.079 | 6.07 | 0.00 | 1.6 | 98.4 | 0.0 | -2.69 | 0.66 | 0.64 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9858 | 1212 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7WR7 | 32717 | 2023-12-07 | 2022-01-26 | 3.1 | 3.81 | — | 3.8 | 0.005 | 0.60 | 0.0 | 0.04 | 10.29 | 0.00 | 2.309 | 10.13 | 3.29 | 9.1 | 90.9 | 0.0 | -4.53 | 0.72 | 0.72 | 2.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3995 | 496 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 8AoX | 15555 | 2023-12-14 | 2022-08-08 | 2.8 | 2.28 | 2.75 | 2.3 | 0.005 | 0.73 | 1.0 | 0.04 | 16.82 | 0.00 | 1.792 | 12.98 | 1.25 | 1.3 | 98.7 | 0.0 | -1.25 | 0.64 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87816 | 10368 | 72 | 0 | 48 | 4848 | 0 | logfile |
✘ | 7To0 | 26025 | 2023-12-07 | 2022-01-22 | 3.5 | 3.68 | — | 3.7 | 0.011 | 1.17 | 0.0 | 0.07 | 16.22 | 0.00 | 2.288 | 8.07 | 0.82 | 7.5 | 92.5 | 0.0 | -3.00 | 0.72 | 0.81 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5989 | 682 | 4 | 24 | 1 | 0 | 0 | logfile |
✘ | 8iA7 | 35297 | 2023-12-08 | 2023-02-08 | 3.1 | 3.36 | 3.21 | 3.4 | 0.011 | 0.73 | 0.0 | 0.05 | 12.55 | 0.00 | 2.202 | 7.95 | 0.00 | 5.0 | 94.8 | 0.2 | -2.23 | 0.58 | 0.78 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8586 | 1123 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7LYA | 23590 | 2023-12-11 | 2021-03-06 | 2.91 | 3.17 | 2.99 | 3.2 | 0.007 | 0.67 | 0.0 | 0.04 | 27.35 | 0.00 | 1.325 | 3.62 | 0.16 | 2.5 | 97.5 | 0.0 | -1.91 | 0.70 | 0.84 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12098 | 767 | 10 | 293 | 0 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2023-12-12 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.64 | 0.00 | 1.956 | 17.39 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✘ | 7QFQ | 13947 | 2023-12-09 | 2021-12-06 | 3.6 | 3.83 | 3.58 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 12.93 | 0.00 | 2.177 | 8.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.65 | 0.70 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10659 | 1291 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SNH | 10257 | 2023-12-09 | 2019-08-24 | 3.9 | 4.16 | — | 3.9 | 0.008 | 1.24 | 1.0 | 0.06 | 14.35 | 0.00 | 2.181 | 19.70 | 1.49 | 11.0 | 88.9 | 0.1 | -4.30 | 0.65 | 0.71 | 2.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7315 | 918 | 4 | 0 | 1 | 1 | 0 | logfile |