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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6XXD | 10647 | 2023-12-10 | 2020-01-27 | 3.22 | 2.31 | — | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 11.45 | 0.00 | 2.647 | 2.40 | 0.00 | 5.7 | 94.3 | 0.0 | -2.51 | 0.70 | 0.68 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14896 | 2000 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8KG8 | 37213 | 2023-12-09 | 2023-08-17 | 4.23 | 6.03 | 4.25 | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.46 | 0.00 | 1.997 | 13.72 | 0.01 | 4.1 | 95.9 | 0.0 | 0.19 | 0.84 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63829 | 7950 | 25 | 25 | 17 | 0 | 0 | logfile |
✘ | 8T1B | 40958 | 2023-12-12 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23180 | 2576 | 12 | 0 | 52 | 72 | 0 | logfile |
✘ | 6NEF | 9357 | 2023-12-14 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 8J7Y | 36053 | 2023-12-09 | 2023-04-28 | 3.4 | 3.79 | 3.40 | 3.7 | 0.002 | 0.50 | 0.0 | 0.04 | 13.14 | 0.00 | 1.914 | 7.04 | 0.16 | 3.1 | 96.9 | 0.0 | 1.40 | 0.75 | 0.80 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11008 | 1426 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 8GKH | 40184 | 2023-12-08 | 2023-03-19 | 2.7 | 2.25 | 2.72 | 2.0 | 0.002 | 1.27 | 0.0 | 0.10 | 22.21 | 0.00 | 1.881 | 5.49 | 0.00 | 1.2 | 98.8 | 0.0 | 3.05 | 0.74 | 0.70 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7570 | 600 | 7 | 125 | 3 | 3 | 0 | logfile |
✘ | 8T1E | 40961 | 2023-12-12 | 2023-06-02 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22115 | 2516 | 12 | 0 | 43 | 36 | 0 | logfile |
✘ | 6XXE | 10648 | 2023-12-10 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BZE | 7314 | 2023-12-10 | 2017-12-23 | 4.0 | 4.03 | — | 4.0 | 0.009 | 1.42 | 0.0 | 0.08 | 17.34 | 0.01 | 1.648 | 79.81 | 9.00 | 13.2 | 86.4 | 0.4 | -5.34 | 0.37 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7072 | 848 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2023-12-07 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EiR | 28162 | 2023-12-07 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SA2 | 40262 | 2023-12-08 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✘ | 8CLJ | 16714 | 2023-12-15 | 2023-02-16 | 3.2 | 3.42 | — | 3.3 | 0.004 | 0.75 | 0.0 | 0.05 | 16.68 | 0.01 | 1.951 | 2.74 | 0.00 | 2.2 | 97.8 | 0.0 | -0.77 | 0.81 | 0.86 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31910 | 3620 | 12 | 140 | 4 | 0 | 0 | logfile |
✘ | 6X80 | 22088 | 2023-12-16 | 2020-06-01 | 3.5 | 3.69 | — | 3.5 | 0.006 | 0.64 | 0.0 | 0.81 | 29.60 | 0.00 | 1.310 | 8.52 | 0.01 | 8.5 | 91.3 | 0.2 | -2.33 | 0.48 | 0.90 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97482 | 12628 | 44 | 0 | 374 | 0 | 0 | logfile |
✘ | 7P7J | 13237 | 2023-12-17 | 2021-07-19 | 2.7 | 2.61 | — | 2.3 | 0.005 | 0.77 | 0.0 | 1.47 | 15.31 | 0.01 | 2.212 | 4.92 | 1.25 | 2.4 | 97.5 | 0.0 | -0.28 | 0.91 | 0.90 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37448 | 4719 | 24 | 0 | 28 | 0 | 0 | logfile |
✘ | 8B3o | 15831 | 2023-12-12 | 2022-09-16 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8SS7 | 40746 | 2023-12-11 | 2023-05-08 | 2.76 | 2.92 | 2.87 | 3.0 | 0.022 | 1.64 | 0.0 | 0.36 | 22.55 | 0.01 | 2.252 | 6.95 | 1.45 | 5.7 | 93.8 | 0.5 | -5.34 | 0.68 | 0.77 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19437 | 2266 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 5W7G | 8780 | 2023-12-07 | 2017-06-19 | 4.5 | 4.20 | — | 4.2 | 0.015 | 1.17 | 0.0 | 0.07 | 16.66 | 0.01 | 2.165 | 7.63 | 0.45 | 1.2 | 98.8 | 0.0 | -0.31 | 0.50 | 0.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53508 | 5397 | 44 | 504 | 0 | 0 | 0 | logfile |
✘ | 6LN6 | 0925 | 2023-12-08 | 2019-12-28 | 2.9 | 3.03 | 2.87 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 12.49 | 0.00 | 2.035 | 6.53 | 0.00 | 2.0 | 98.0 | 0.0 | -3.94 | 0.65 | 0.82 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7836 | 1010 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 8FCR | 28991 | 2023-12-16 | 2022-12-01 | 4.12 | 4.48 | 4.26 | 4.3 | 0.011 | 0.85 | 0.0 | 0.06 | 12.23 | 0.00 | 2.340 | 1.40 | 0.00 | 1.7 | 98.2 | 0.1 | 0.38 | 0.70 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36931 | 4679 | 13 | 0 | 12 | 0 | 0 | logfile |