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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5UK0 | 8562 | 2023-12-16 | 2017-01-19 | 4.8 | 5.42 | — | 5.2 | 0.010 | 1.26 | 0.0 | 0.06 | 10.83 | 0.01 | 2.096 | 3.58 | 0.16 | 8.3 | 91.6 | 0.1 | -3.58 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 5UK1 | 8563 | 2023-12-16 | 2017-01-19 | 4.8 | 7.30 | — | 7.0 | 0.010 | 1.28 | 0.0 | 0.07 | 10.78 | 0.01 | 2.106 | 4.22 | 0.16 | 8.1 | 91.8 | 0.1 | -3.97 | 0.88 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 7DBH | 30631 | 2023-12-09 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.57 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 8DQ0 | 27645 | 2023-12-12 | 2022-07-18 | 3.74 | 3.61 | 3.79 | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 16.04 | 0.01 | 2.203 | 6.20 | 1.20 | 4.9 | 95.1 | 0.0 | -1.54 | 0.53 | 0.72 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 5UK2 | 8564 | 2023-12-16 | 2017-01-19 | 4.8 | 4.64 | — | 4.6 | 0.012 | 1.36 | 0.0 | 0.07 | 11.22 | 0.01 | 2.083 | 3.96 | 0.16 | 8.7 | 91.1 | 0.1 | -4.11 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 6TM2 | 10517 | 2023-12-08 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 8GRM | 34207 | 2023-12-13 | 2022-09-02 | 3.05 | 3.23 | 3.06 | 3.1 | 0.009 | 0.93 | 0.0 | 0.06 | 23.20 | 0.01 | 2.289 | 4.52 | 0.29 | 4.4 | 95.6 | 0.0 | -5.38 | 0.81 | 0.81 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15415 | 1195 | 16 | 289 | 4 | 0 | 0 | logfile |
✘ | 7EFD | 31084 | 2023-12-07 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 8DQ1 | 27646 | 2023-12-12 | 2022-07-18 | 4.1 | 3.85 | 3.29 | 3.9 | 0.011 | 1.10 | 3.0 | 0.06 | 19.21 | 0.01 | 2.082 | 14.69 | 0.87 | 5.7 | 94.3 | 0.0 | -1.40 | 0.44 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17754 | 1075 | 8 | 36 | 2 | 0 | 8343 | logfile |
✘ | 6HN4 | 0246 | 2023-12-07 | 2018-09-14 | 4.2 | 4.43 | — | 4.1 | 0.007 | 1.50 | 2.0 | 0.07 | 9.90 | 0.01 | 2.187 | 6.18 | 0.00 | 6.9 | 91.4 | 1.8 | -2.18 | 0.73 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5702 | 700 | 2 | 0 | 6 | 0 | 0 | logfile |
✘ | 6oLL | 20116 | 2023-12-12 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XJi | 33228 | 2023-12-08 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.92 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7NDC | 12283 | 2023-12-15 | 2021-01-30 | 4.1 | 4.42 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 11.86 | 0.00 | 2.118 | 3.57 | 0.37 | 3.9 | 96.1 | 0.0 | -0.43 | 0.83 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30645 | 3852 | 27 | 0 | 54 | 0 | 0 | logfile |
✘ | 6L48 | 0832 | 2023-12-08 | 2019-10-16 | 3.5 | 3.71 | — | 3.7 | 0.003 | 0.76 | 2.0 | 0.05 | 12.00 | 0.01 | 2.217 | 10.02 | 2.45 | 6.6 | 93.4 | 0.0 | -3.38 | 0.64 | 0.74 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6528 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7R12 | 14228 | 2023-12-08 | 2022-02-02 | 3.3 | 3.37 | 3.22 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 13.55 | 0.00 | 2.161 | 4.03 | 0.00 | 2.8 | 97.2 | 0.0 | 0.39 | 0.74 | 0.81 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6858 | 839 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 6NB7 | 0404 | 2023-12-13 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.016 | 1.50 | 1.0 | 0.10 | 9.50 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2023-12-12 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✘ | 7DXA | 30902 | 2023-12-10 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15162 | 1629 | 23 | 0 | 50 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-12-13 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 6HYD | 0308 | 2023-12-09 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |