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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8E9H | 27964 | 2023-12-16 | 2022-08-26 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36670 | 5058 | 22 | 0 | 14 | 0 | 0 | logfile |
✘ | 7ZQ6 | 14865 | 2023-12-15 | 2022-04-29 | 2.75 | 3.18 | 3.04 | 2.9 | 0.009 | 0.93 | 2.0 | 0.08 | 24.03 | 0.00 | 2.140 | 5.42 | 3.67 | 5.0 | 94.8 | 0.2 | -0.70 | 0.76 | 0.85 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90507 | 3091 | 32 | 3095 | 0 | 0 | 0 | logfile |
✘ | 7W0M | 32244 | 2023-12-09 | 2021-11-18 | 3.71 | 2.51 | 3.74 | 2.2 | 0.005 | 0.81 | 0.0 | 0.05 | 13.45 | 0.00 | 2.230 | 11.46 | 0.00 | 5.6 | 94.4 | 0.0 | -1.90 | 0.73 | 0.74 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8929 | 1134 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-12-08 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JPA | 9868 | 2023-12-12 | 2019-03-26 | 2.6 | 2.76 | — | 2.8 | 0.013 | 1.51 | 3.0 | 0.12 | 18.62 | 0.01 | 1.921 | 38.35 | 11.40 | 8.8 | 89.5 | 1.7 | -3.83 | 0.54 | 0.61 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22232 | 2694 | 14 | 0 | 42 | 0 | 0 | logfile |
✘ | 7WZ1 | 32901 | 2023-12-13 | 2022-02-16 | 3.4 | 2.58 | — | 2.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.69 | 0.00 | 2.212 | 7.59 | 5.40 | 7.6 | 92.4 | 0.0 | -4.14 | 0.74 | 0.73 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24467 | 3092 | 6 | 0 | 28 | 0 | 0 | logfile |
✘ | 6Li9 | 0903 | 2023-12-11 | 2019-12-10 | 2.3 | 2.38 | — | 2.4 | 0.008 | 1.00 | 0.0 | 0.07 | 14.65 | 0.01 | 2.265 | 2.26 | 0.21 | 5.0 | 95.0 | 0.0 | -4.31 | 0.63 | 0.75 | 4.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17988 | 2164 | 22 | 0 | 26 | 246 | 0 | logfile |
✘ | 7VFW | 31961 | 2023-12-12 | 2021-09-13 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19746 | 2383 | 8 | 0 | 39 | 0 | 0 | logfile |
✘ | 7D8X | 30614 | 2023-12-09 | 2020-10-11 | 2.6 | 2.78 | — | 2.7 | 0.010 | 1.31 | 0.0 | 0.06 | 12.30 | 0.01 | 2.221 | 3.29 | 0.18 | 5.1 | 94.9 | 0.0 | -3.36 | 0.70 | 0.86 | 4.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10928 | 1314 | 13 | 0 | 28 | 0 | 0 | logfile |
✘ | 6i7T | 4428 | 2023-12-16 | 2018-11-17 | 4.61 | 4.75 | 4.92 | 4.6 | 0.006 | 1.17 | 6.0 | 0.07 | 13.63 | 0.01 | 2.245 | 7.08 | 2.54 | 12.0 | 87.5 | 0.4 | -4.32 | 0.74 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37004 | 4682 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U5Z | 20659 | 2023-12-13 | 2019-08-28 | 3.5 | 3.66 | — | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 9.08 | 0.00 | 2.194 | 6.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.58 | 0.49 | 0.58 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24606 | 3174 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U9V | 20702 | 2023-12-14 | 2019-09-09 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26701 | 1680 | 15 | 3 | 54 | 0 | 12634 | logfile |
✘ | 7TGW | 25887 | 2023-12-14 | 2022-01-09 | 3.0 | 3.69 | — | 3.4 | 0.007 | 0.86 | 0.0 | 0.10 | 15.75 | 0.01 | 1.983 | 10.37 | 0.24 | 7.3 | 92.6 | 0.0 | -2.46 | 0.86 | 0.88 | 3.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26617 | 3307 | 18 | 0 | 45 | 0 | 0 | logfile |
✘ | 7YFL | 33792 | 2023-12-12 | 2022-07-08 | 3.9 | 4.15 | 3.84 | 4.0 | 0.005 | 0.64 | 0.0 | 0.04 | 16.70 | 0.00 | 2.260 | 9.01 | 0.34 | 7.9 | 91.8 | 0.3 | -0.49 | 0.72 | 0.77 | 1.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19968 | 2778 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 5GAE | 8001 | 2023-12-15 | 2015-11-25 | 3.33 | 3.45 | — | 3.3 | 0.007 | 0.94 | 0.0 | 0.04 | 22.21 | 0.00 | 1.884 | 5.65 | 5.36 | 3.0 | 96.9 | 0.1 | -2.76 | 0.79 | 0.88 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 95192 | 3886 | 41 | 3007 | 349 | 0 | 0 | logfile |
✘ | 6U9W | 20703 | 2023-12-14 | 2019-09-09 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26919 | 1686 | 12 | 3 | 42 | 0 | 12885 | logfile |
✘ | 7UB5 | 26435 | 2023-12-13 | 2022-03-14 | 3.35 | 3.64 | 3.34 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 13.35 | 0.01 | 2.287 | 3.61 | 0.00 | 3.5 | 96.5 | 0.0 | -0.85 | 0.85 | 0.87 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24923 | 3104 | 16 | 0 | 47 | 0 | 0 | logfile |
✘ | 6CRV | 7573 | 2023-12-12 | 2018-03-19 | 3.2 | 3.31 | 3.17 | 3.3 | 0.013 | 1.09 | 0.0 | 0.06 | 9.58 | 0.01 | 2.170 | 4.36 | 0.26 | 4.1 | 95.9 | 0.0 | -3.09 | 0.74 | 0.81 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21036 | 2643 | 15 | 0 | 39 | 0 | 0 | logfile |
✘ | 6JP5 | 9866 | 2023-12-12 | 2019-03-25 | 2.9 | 3.03 | — | 3.1 | 0.016 | 1.54 | 4.0 | 0.13 | 15.71 | 0.01 | 1.921 | 28.83 | 6.11 | 7.7 | 91.7 | 0.6 | -3.65 | 0.56 | 0.62 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22068 | 2694 | 14 | 0 | 39 | 0 | 0 | logfile |
✘ | 7Z17 | 14443 | 2023-12-17 | 2022-02-24 | 2.57 | 2.96 | 2.68 | 2.9 | 0.005 | 0.53 | 0.0 | 0.04 | 10.98 | 0.00 | 1.726 | 6.80 | 0.84 | 2.9 | 97.1 | 0.0 | 1.01 | 0.72 | 0.77 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37592 | 2432 | 14 | 0 | 5 | 0 | 18669 | logfile |