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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8FCN | 28987 | 2023-12-16 | 2022-12-01 | 2.95 | 3.93 | 4.11 | 3.5 | 0.010 | 0.82 | 0.0 | 0.06 | 12.73 | 0.00 | 2.403 | 0.65 | 0.11 | 1.2 | 98.7 | 0.1 | 0.17 | 0.76 | 0.64 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35034 | 4446 | 18 | 0 | 12 | 0 | 0 | logfile |
✘ | 5W7G | 8780 | 2023-12-07 | 2017-06-19 | 4.5 | 4.20 | — | 4.2 | 0.015 | 1.17 | 0.0 | 0.07 | 16.66 | 0.01 | 2.165 | 7.63 | 0.45 | 1.2 | 98.8 | 0.0 | -0.31 | 0.50 | 0.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53508 | 5397 | 44 | 504 | 0 | 0 | 0 | logfile |
✘ | 8AoX | 15555 | 2023-12-14 | 2022-08-08 | 2.8 | 2.28 | 2.75 | 2.3 | 0.005 | 0.73 | 1.0 | 0.04 | 16.82 | 0.00 | 1.792 | 12.98 | 1.25 | 1.3 | 98.7 | 0.0 | -1.25 | 0.64 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87816 | 10368 | 72 | 0 | 48 | 4848 | 0 | logfile |
✘ | 8BKB | 16095 | 2023-12-16 | 2022-11-08 | 2.2 | 1.97 | 2.09 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.225 | 1.59 | 1.40 | 1.4 | 98.6 | 0.0 | 4.82 | 0.71 | 0.86 | 6.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35139 | 4128 | 54 | 0 | 6 | 1317 | 0 | logfile |
✘ | 8EFQ | 28088 | 2023-12-08 | 2022-09-08 | 3.3 | 3.58 | 3.24 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.64 | 0.01 | 2.298 | 3.12 | 0.00 | 1.4 | 98.6 | 0.0 | -1.52 | 0.60 | 0.72 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7046 | 892 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7o0W | 12681 | 2023-12-08 | 2021-03-27 | 2.47 | 2.42 | — | 2.3 | 0.018 | 4.34 | 0.0 | 0.06 | 22.62 | 0.01 | 2.010 | 1.98 | 0.28 | 1.4 | 98.6 | 0.0 | 1.25 | 0.82 | 0.86 | 5.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56476 | 5076 | 236 | 0 | 320 | 406 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-12-13 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7TEW | 25853 | 2023-12-08 | 2022-01-06 | 3.52 | 4.17 | — | 3.8 | 0.005 | 0.85 | 0.0 | 0.06 | 13.34 | 0.01 | 2.344 | 2.89 | 0.14 | 1.4 | 98.6 | 0.0 | 0.00 | 0.82 | 0.82 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6555 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 8F7Q | 28907 | 2023-12-09 | 2022-11-20 | 3.22 | 3.34 | 3.24 | 3.4 | 0.004 | 0.87 | 0.0 | 0.07 | 8.26 | 0.01 | 2.262 | 3.31 | 0.00 | 1.4 | 98.6 | 0.0 | 0.89 | 0.64 | 0.78 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11994 | 1484 | 11 | 0 | 10 | 0 | 0 | logfile |
✘ | 8PN7 | 17777 | 2023-12-16 | 2023-06-30 | 2.03 | 2.46 | 2.13 | 2.4 | 0.044 | 1.46 | 0.0 | 0.04 | 13.01 | 0.00 | 1.664 | 8.62 | 0.35 | 1.5 | 98.5 | 0.0 | 1.20 | 0.72 | 0.85 | 5.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34872 | 4308 | 36 | 0 | 12 | 1476 | 0 | logfile |
✘ | 7SP8 | 25368 | 2023-12-08 | 2021-11-02 | 2.7 | 2.98 | — | 2.9 | 0.008 | 0.77 | 0.0 | 0.05 | 14.94 | 0.00 | 2.204 | 5.45 | 0.16 | 1.5 | 98.5 | 0.0 | 2.53 | 0.72 | 0.82 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6090 | 742 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-12-13 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-12-09 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.72 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8FLC | 29274 | 2023-12-15 | 2022-12-21 | 2.76 | 2.78 | 2.87 | 2.9 | 0.007 | 0.76 | 0.0 | 0.03 | 21.63 | 0.03 | 1.975 | 2.57 | 0.00 | 1.5 | 98.5 | 0.0 | 0.65 | 0.82 | 0.82 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139595 | 7626 | 65 | 3648 | 95 | 0 | 0 | logfile |
✘ | 6XLC | 22239 | 2023-12-09 | 2020-06-28 | 3.66 | 3.01 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 12.92 | 0.00 | 2.079 | 6.07 | 0.00 | 1.6 | 98.4 | 0.0 | -2.69 | 0.66 | 0.64 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9858 | 1212 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7LN5 | 23449 | 2023-12-16 | 2021-02-06 | 3.09 | 3.65 | 3.09 | 3.1 | 0.013 | 0.67 | 0.0 | 0.04 | 15.27 | 0.01 | 2.010 | 10.02 | 0.03 | 1.6 | 98.4 | 0.0 | 1.09 | 0.80 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35051 | 4425 | 13 | 0 | 41 | 0 | 0 | logfile |
✘ | 8FGX | 29077 | 2023-12-09 | 2022-12-13 | 2.62 | 3.60 | 2.58 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 9.99 | 0.00 | 2.400 | 1.82 | 0.00 | 1.6 | 98.4 | 0.0 | 1.41 | 0.90 | 0.88 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 645 | 4 | 0 | 3 | 0 | 4873 | logfile |
✘ | 7TEo | 25848 | 2023-12-16 | 2022-01-05 | 2.97 | 3.22 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 12.70 | 0.00 | 1.883 | 4.54 | 0.00 | 1.6 | 98.4 | 0.0 | 0.93 | 0.71 | 0.79 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97522 | 6288 | 30 | 0 | 0 | 0 | 48612 | logfile |
✘ | 7XKR | 33265 | 2023-12-13 | 2022-04-20 | 2.6 | 3.37 | 2.59 | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 12.97 | 0.00 | 2.006 | 3.17 | 0.00 | 1.6 | 98.4 | 0.0 | 1.93 | 0.86 | 0.90 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25246 | 3257 | 14 | 0 | 11 | 0 | 0 | logfile |
✘ | 8DM7 | 27529 | 2023-12-16 | 2022-07-08 | 2.49 | 3.10 | 2.62 | 2.7 | 0.005 | 0.84 | 0.0 | 0.06 | 13.32 | 0.01 | 2.296 | 3.28 | 0.58 | 1.6 | 98.4 | 0.0 | 0.44 | 0.79 | 0.78 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35165 | 4330 | 28 | 0 | 61 | 0 | 0 | logfile |