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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7SQR | 25391 | 2023-12-11 | 2021-11-06 | 3.4 | 4.22 | 3.33 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 13.78 | 0.00 | 2.185 | 6.82 | 0.00 | 3.1 | 96.9 | 0.0 | 1.05 | 0.85 | 0.83 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17272 | 2216 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AP9 | 11851 | 2023-12-15 | 2020-10-16 | 3.01 | 3.70 | — | 3.2 | 0.008 | 0.68 | 0.0 | 0.05 | 12.01 | 0.00 | 2.023 | 4.33 | 2.91 | 6.9 | 93.1 | 0.0 | -0.45 | 0.90 | 0.88 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30881 | 3782 | 14 | 11 | 5 | 0 | 0 | logfile |
✘ | 7KEJ | 22839 | 2023-12-10 | 2020-10-11 | 3.8 | 3.55 | — | 3.6 | 0.021 | 1.73 | 0.0 | 0.11 | 9.85 | 0.01 | 1.201 | 0.59 | 0.00 | 0.4 | 99.6 | 0.0 | 1.20 | 0.82 | 0.84 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13806 | 1740 | 18 | 0 | 24 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-12-10 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.79 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7Koo | 22979 | 2023-12-17 | 2020-11-09 | 3.0 | 2.99 | 3.14 | 3.1 | 0.010 | 1.14 | 0.0 | 0.09 | 13.84 | 0.01 | 1.918 | 8.59 | 1.20 | 3.7 | 96.3 | 0.0 | -0.67 | 0.70 | 0.77 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37095 | 2315 | 25 | 0 | 40 | 0 | 18180 | logfile |
✘ | 8J7V | 36050 | 2023-12-09 | 2023-04-28 | 2.79 | 2.88 | 2.79 | 2.8 | 0.004 | 0.73 | 0.0 | 0.05 | 16.71 | 0.01 | 2.208 | 7.08 | 1.54 | 3.3 | 96.7 | 0.0 | 0.39 | 0.62 | 0.79 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11083 | 1432 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BXU | 30238 | 2023-12-10 | 2020-04-20 | 3.7 | 3.82 | — | 3.8 | 0.008 | 1.17 | 2.0 | 0.07 | 11.21 | 0.01 | 2.267 | 7.78 | 0.43 | 8.8 | 91.2 | 0.0 | -4.33 | 0.73 | 0.87 | 3.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13444 | 1752 | 6 | 0 | 14 | 0 | 0 | logfile |
✘ | 7B1G | 11985 | 2023-12-12 | 2020-11-24 | 3.6 | 3.70 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.05 | 15.84 | 0.00 | 2.213 | 12.50 | 0.09 | 7.4 | 92.6 | 0.0 | -2.22 | 0.79 | 0.85 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21661 | 2689 | 9 | 0 | 8 | 0 | 0 | logfile |
✘ | 7WoB | 32647 | 2023-12-16 | 2022-01-21 | 3.25 | 2.88 | — | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 9.46 | 0.00 | 2.243 | 7.02 | 4.57 | 5.0 | 95.0 | 0.0 | -3.68 | 0.85 | 0.77 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35134 | 4476 | 12 | 0 | 38 | 0 | 0 | logfile |
✘ | 7VQ5 | 32086 | 2023-12-08 | 2021-10-19 | 3.1 | 3.31 | — | 3.3 | 0.009 | 0.77 | 0.0 | 0.05 | 14.85 | 0.00 | 2.110 | 7.38 | 0.14 | 7.4 | 92.6 | 0.0 | -3.56 | 0.66 | 0.84 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6315 | 800 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-12-13 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XX2 | 33498 | 2023-12-16 | 2022-05-28 | 3.6 | 3.49 | 3.64 | 3.3 | 0.006 | 0.95 | 4.0 | 0.06 | 14.51 | 0.01 | 2.033 | 16.70 | 1.27 | 9.9 | 90.0 | 0.0 | -1.28 | 0.86 | 0.82 | 1.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36436 | 4528 | 11 | 0 | 5 | 0 | 0 | logfile |
✘ | 6CiJ | 7480 | 2023-12-12 | 2018-02-24 | 3.9 | 4.19 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 19.65 | 0.00 | 2.055 | 13.51 | 2.25 | 3.6 | 96.4 | 0.0 | -2.66 | 0.90 | 0.85 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20413 | 2045 | 13 | 212 | 4 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-12-13 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2023-12-10 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 13.73 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 6K7X | 9944 | 2023-12-12 | 2019-06-10 | 3.27 | 3.51 | — | 3.4 | 0.008 | 1.07 | 0.0 | 0.06 | 18.40 | 0.01 | 2.270 | 3.56 | 0.21 | 4.2 | 95.8 | 0.0 | -4.41 | 0.80 | 0.85 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22944 | 2622 | 24 | 0 | 30 | 0 | 0 | logfile |
✘ | 8DDR | 27339 | 2023-12-15 | 2022-06-18 | 3.2 | 2.96 | 3.18 | 3.2 | 0.015 | 0.94 | 0.0 | 0.07 | 11.80 | 0.00 | 2.251 | 5.05 | 1.77 | 3.3 | 96.7 | 0.0 | 1.33 | 0.82 | 0.82 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32074 | 3872 | 12 | 0 | 78 | 0 | 0 | logfile |
✘ | 7ZNJ | 14803 | 2023-12-16 | 2022-04-21 | 2.4 | 2.51 | 2.47 | 2.5 | 0.004 | 0.82 | 0.0 | 0.05 | 17.52 | 0.01 | 2.092 | 3.02 | 0.83 | 1.1 | 98.9 | 0.0 | -1.45 | 0.70 | 0.77 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35088 | 4242 | 36 | 36 | 12 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-12-09 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6NT5 | 0502 | 2023-12-07 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.59 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |