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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7o85 | 12761 | 2023-12-14 | 2021-04-14 | 3.3 | 3.50 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.51 | 0.00 | 1.470 | 7.44 | 0.00 | 3.3 | 96.7 | 0.0 | -0.25 | 0.71 | 0.75 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28525 | 3843 | 28 | 0 | 14 | 0 | 0 | logfile |
✘ | 8GVC | 34290 | 2023-12-08 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7DCC | 30635 | 2023-12-16 | 2020-10-24 | 4.3 | 4.77 | — | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 7.38 | 0.00 | 2.279 | 3.10 | 1.39 | 2.3 | 97.7 | 0.0 | -4.06 | 0.73 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35019 | 4485 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-12-10 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.79 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2023-12-08 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZDG | 11173 | 2023-12-14 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 9.08 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 7oF3 | 12868 | 2023-12-17 | 2021-05-04 | 2.7 | 3.23 | 2.69 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 18.28 | 0.00 | 1.761 | 5.69 | 0.00 | 3.2 | 96.8 | 0.0 | 1.34 | 0.88 | 0.88 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101226 | 8627 | 61 | 1442 | 63 | 0 | 0 | logfile |
✘ | 8F0H | 28757 | 2023-12-07 | 2022-11-02 | 3.18 | 3.63 | 3.09 | 3.5 | 0.003 | 0.50 | 0.0 | 0.04 | 9.40 | 0.00 | 2.256 | 7.02 | 0.38 | 4.0 | 96.0 | 0.0 | -0.58 | 0.74 | 0.80 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4959 | 634 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8J7Y | 36053 | 2023-12-09 | 2023-04-28 | 3.4 | 3.79 | 3.40 | 3.7 | 0.002 | 0.50 | 0.0 | 0.04 | 13.14 | 0.00 | 1.914 | 7.04 | 0.16 | 3.1 | 96.9 | 0.0 | 1.40 | 0.75 | 0.80 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11008 | 1426 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 8CYD | 27075 | 2023-12-14 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7NJK | 12377 | 2023-12-13 | 2021-02-17 | 2.52 | 2.49 | — | 2.2 | 0.004 | 0.51 | 0.0 | 0.04 | 14.88 | 0.00 | 2.061 | 4.73 | 0.00 | 2.4 | 97.6 | 0.1 | 1.64 | 0.85 | 0.87 | 4.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74650 | 4934 | 31 | 0 | 11 | 16 | 37359 | logfile |
✘ | 8JAU | 36134 | 2023-12-11 | 2023-05-07 | 3.22 | 3.52 | 3.25 | 3.6 | 0.004 | 0.52 | 0.0 | 0.04 | 14.40 | 0.00 | 2.183 | 7.18 | 0.05 | 4.0 | 96.0 | 0.0 | -0.99 | 0.70 | 0.75 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17064 | 2096 | 11 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZN2 | 14799 | 2023-12-15 | 2022-04-20 | 4.29 | 3.73 | 4.16 | 3.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.12 | 0.00 | 2.048 | 7.87 | 0.00 | 3.5 | 96.5 | 0.0 | -1.30 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89393 | 11481 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LB5 | 23263 | 2023-12-13 | 2021-01-07 | 3.16 | 4.00 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.28 | 0.00 | 2.323 | 7.12 | 0.93 | 1.9 | 98.1 | 0.0 | -1.95 | 0.87 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23616 | 3120 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VNJ | 32041 | 2023-12-15 | 2021-10-11 | 2.56 | 2.25 | — | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.80 | 0.00 | 2.166 | 5.63 | 0.40 | 5.0 | 95.0 | 0.0 | -0.46 | 0.69 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30661 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 6XLC | 22239 | 2023-12-09 | 2020-06-28 | 3.66 | 3.01 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 12.92 | 0.00 | 2.079 | 6.07 | 0.00 | 1.6 | 98.4 | 0.0 | -2.69 | 0.66 | 0.64 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9858 | 1212 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7EoT | 31230 | 2023-12-13 | 2021-04-22 | 3.8 | 4.25 | — | 4.1 | 0.003 | 0.52 | 2.0 | 0.04 | 9.38 | 0.00 | 2.074 | 10.52 | 2.22 | 4.2 | 95.8 | 0.0 | 0.02 | 0.82 | 0.71 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24598 | 3088 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 7X6A | 33019 | 2023-12-15 | 2022-03-07 | 3.5 | 3.86 | — | 3.8 | 0.002 | 0.52 | 0.0 | 0.04 | 14.04 | 0.00 | 1.981 | 7.25 | 0.06 | 6.2 | 93.5 | 0.4 | -1.29 | 0.76 | 0.78 | 1.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30879 | 3969 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F1i | 28797 | 2023-12-15 | 2022-11-05 | 3.0 | 3.91 | — | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 14.60 | 0.00 | 2.170 | 5.59 | 0.89 | 3.4 | 96.6 | 0.0 | -1.10 | 0.88 | 0.84 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30670 | 3678 | 14 | 91 | 3 | 8 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-12-09 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |