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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8HF2 | 34710 | 2023-12-07 | 2022-11-09 | 4.14 | 5.08 | 4.11 | 4.8 | 0.012 | 1.04 | 0.0 | 0.05 | 14.20 | 0.00 | 2.264 | 15.84 | 0.00 | 5.1 | 94.9 | 0.0 | -4.39 | 0.57 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4660 | 600 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WRE | 32724 | 2023-12-15 | 2022-01-26 | 2.52 | 3.32 | — | 3.1 | 0.013 | 1.18 | 0.0 | 0.07 | 10.86 | 0.01 | 2.212 | 6.94 | 0.24 | 6.2 | 93.5 | 0.3 | -3.69 | 0.75 | 0.82 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30468 | 3720 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 6PCV | 20308 | 2023-12-08 | 2019-06-18 | 3.2 | 2.93 | 3.33 | 3.3 | 0.006 | 0.98 | 0.0 | 0.06 | 14.31 | 0.01 | 2.235 | 6.90 | 0.71 | 4.0 | 96.0 | 0.0 | -3.37 | 0.71 | 0.72 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9035 | 1155 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2023-12-08 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 13.30 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2023-12-13 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V69 | 31739 | 2023-12-09 | 2021-08-20 | 3.4 | 2.24 | — | 2.0 | 0.003 | 0.65 | 0.0 | 0.04 | 12.64 | 0.00 | 2.096 | 13.28 | 0.00 | 2.9 | 97.1 | 0.0 | -2.02 | 0.68 | 0.64 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8539 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZLT | 11273 | 2023-12-13 | 2020-07-01 | 3.9 | 3.82 | — | 3.8 | 0.005 | 0.82 | 0.0 | 0.05 | 15.48 | 0.01 | 2.198 | 6.02 | 0.98 | 8.0 | 92.0 | 0.0 | -4.15 | 0.80 | 0.79 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23386 | 2970 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DFZ | 30668 | 2023-12-08 | 2020-11-10 | 3.58 | 3.82 | — | 3.8 | 0.010 | 0.99 | 0.0 | 0.06 | 15.65 | 0.03 | 2.157 | 18.62 | 0.00 | 7.1 | 92.9 | 0.0 | -3.56 | 0.63 | 0.80 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7412 | 897 | 7 | 0 | 24 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WYB | 32890 | 2023-12-08 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F7Q | 28907 | 2023-12-09 | 2022-11-20 | 3.22 | 3.34 | 3.24 | 3.4 | 0.004 | 0.87 | 0.0 | 0.07 | 8.26 | 0.01 | 2.262 | 3.31 | 0.00 | 1.4 | 98.6 | 0.0 | 0.89 | 0.64 | 0.78 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11994 | 1484 | 11 | 0 | 10 | 0 | 0 | logfile |
✘ | 6WPW | 21866 | 2023-12-08 | 2020-04-28 | 3.1 | 3.57 | — | 3.5 | 0.007 | 0.95 | 0.0 | 0.06 | 10.18 | 0.01 | 1.735 | 6.24 | 0.00 | 5.9 | 94.1 | 0.0 | -4.62 | 0.57 | 0.80 | 4.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9262 | 1176 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AoC | 11840 | 2023-12-15 | 2020-10-14 | 3.84 | 3.91 | — | 3.9 | 0.007 | 0.88 | 0.0 | 0.05 | 15.05 | 0.01 | 1.929 | 15.82 | 0.33 | 11.2 | 88.5 | 0.3 | -4.08 | 0.70 | 0.81 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29724 | 3746 | 17 | 0 | 6 | 0 | 0 | logfile |
✘ | 6PB1 | 20285 | 2023-12-08 | 2019-06-12 | 2.8 | 3.39 | — | 3.4 | 0.003 | 0.79 | 0.0 | 0.06 | 9.37 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.56 | 0.75 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✘ | 8A7D | 15220 | 2023-12-09 | 2022-06-20 | 3.06 | 3.45 | 3.18 | 3.4 | 0.004 | 0.76 | 0.0 | 0.05 | 14.79 | 0.01 | 2.115 | 7.59 | 0.50 | 5.3 | 94.2 | 0.5 | -0.22 | 0.64 | 0.77 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10771 | 1361 | 5 | 0 | 17 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-12-07 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7To0 | 26025 | 2023-12-07 | 2022-01-22 | 3.5 | 3.68 | — | 3.7 | 0.011 | 1.17 | 0.0 | 0.07 | 16.22 | 0.00 | 2.288 | 8.07 | 0.82 | 7.5 | 92.5 | 0.0 | -3.00 | 0.72 | 0.81 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5989 | 682 | 4 | 24 | 1 | 0 | 0 | logfile |
✘ | 7DBP | 30161 | 2023-12-10 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.26 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2023-12-11 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 10.41 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7UML | 26603 | 2023-12-10 | 2022-04-07 | 3.5 | 3.77 | 3.85 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.49 | 0.00 | 2.114 | 7.56 | 0.00 | 2.0 | 97.4 | 0.6 | -2.75 | 0.66 | 0.69 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13227 | 812 | 7 | 13 | 0 | 0 | 6477 | logfile |