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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BKB | 16095 | 2023-12-16 | 2022-11-08 | 2.2 | 1.97 | 2.09 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.225 | 1.59 | 1.40 | 1.4 | 98.6 | 0.0 | 4.82 | 0.71 | 0.86 | 6.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35139 | 4128 | 54 | 0 | 6 | 1317 | 0 | logfile |
✘ | 8PN7 | 17777 | 2023-12-16 | 2023-06-30 | 2.03 | 2.46 | 2.13 | 2.4 | 0.044 | 1.46 | 0.0 | 0.04 | 13.01 | 0.00 | 1.664 | 8.62 | 0.35 | 1.5 | 98.5 | 0.0 | 1.20 | 0.72 | 0.85 | 5.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34872 | 4308 | 36 | 0 | 12 | 1476 | 0 | logfile |
✘ | 7Y8T | 33685 | 2023-12-11 | 2022-06-24 | 2.9 | 3.12 | 2.98 | 3.1 | 0.004 | 0.63 | 1.0 | 0.04 | 16.81 | 0.00 | 2.218 | 4.76 | 1.21 | 6.0 | 93.8 | 0.2 | -0.46 | 0.74 | 0.85 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16754 | 1978 | 4 | 37 | 4 | 0 | 0 | logfile |
✘ | 8EDG | 28034 | 2023-12-13 | 2022-09-04 | 4.64 | 4.06 | 4.63 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 21.43 | 0.00 | 2.143 | 12.47 | 0.05 | 4.8 | 95.2 | 0.0 | -0.34 | 0.69 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23358 | 2348 | 18 | 216 | 6 | 0 | 0 | logfile |
✘ | 8KG8 | 37213 | 2023-12-09 | 2023-08-17 | 4.23 | 6.03 | 4.25 | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.46 | 0.00 | 1.997 | 13.72 | 0.01 | 4.1 | 95.9 | 0.0 | 0.19 | 0.84 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63829 | 7950 | 25 | 25 | 17 | 0 | 0 | logfile |
✘ | 8FGX | 29077 | 2023-12-09 | 2022-12-13 | 2.62 | 3.60 | 2.58 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 9.99 | 0.00 | 2.400 | 1.82 | 0.00 | 1.6 | 98.4 | 0.0 | 1.41 | 0.90 | 0.88 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 645 | 4 | 0 | 3 | 0 | 4873 | logfile |
✘ | 8HFY | 34728 | 2023-12-09 | 2022-11-13 | 3.21 | 3.55 | 3.27 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 14.41 | 0.00 | 2.081 | 4.76 | 1.44 | 3.2 | 96.8 | 0.0 | 0.29 | 0.74 | 0.83 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6568 | 789 | 6 | 0 | 10 | 0 | 0 | logfile |
✘ | 8J7Y | 36053 | 2023-12-09 | 2023-04-28 | 3.4 | 3.79 | 3.40 | 3.7 | 0.002 | 0.50 | 0.0 | 0.04 | 13.14 | 0.00 | 1.914 | 7.04 | 0.16 | 3.1 | 96.9 | 0.0 | 1.40 | 0.75 | 0.80 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11008 | 1426 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-12-13 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 15.53 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 8A7T | 15225 | 2023-12-07 | 2022-06-21 | 3.0 | 2.93 | 3.07 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 8.48 | 0.00 | 2.302 | 5.04 | 0.00 | 2.8 | 97.2 | 0.0 | -4.48 | 0.39 | 0.85 | 4.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3702 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H6H | 34504 | 2023-12-15 | 2022-10-17 | 2.3 | 3.01 | 2.32 | 2.7 | 0.003 | 0.47 | 0.0 | 0.04 | 16.99 | 0.00 | 2.112 | 1.88 | 0.94 | 3.1 | 96.9 | 0.0 | 1.06 | 0.84 | 0.91 | 5.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31017 | 1971 | 4 | 0 | 4 | 0 | 15181 | logfile |
✘ | 6LN6 | 0925 | 2023-12-08 | 2019-12-28 | 2.9 | 3.03 | 2.87 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 12.49 | 0.00 | 2.035 | 6.53 | 0.00 | 2.0 | 98.0 | 0.0 | -3.94 | 0.65 | 0.82 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7836 | 1010 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2023-12-07 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 8JAU | 36134 | 2023-12-11 | 2023-05-07 | 3.22 | 3.52 | 3.25 | 3.6 | 0.004 | 0.52 | 0.0 | 0.04 | 14.40 | 0.00 | 2.183 | 7.18 | 0.05 | 4.0 | 96.0 | 0.0 | -0.99 | 0.70 | 0.75 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17064 | 2096 | 11 | 0 | 1 | 0 | 0 | logfile |
✘ | 8A1W | 15091 | 2023-12-15 | 2022-06-02 | 2.56 | 2.20 | 2.53 | 2.4 | 0.004 | 0.56 | 0.0 | 0.04 | 16.54 | 0.00 | 2.014 | 2.96 | 0.32 | 1.1 | 98.9 | 0.0 | 1.65 | 0.60 | 0.72 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30172 | 1908 | 16 | 0 | 16 | 289 | 14776 | logfile |
✘ | 8FNK | 29316 | 2023-12-15 | 2022-12-27 | 3.7 | 4.05 | 3.77 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 17.78 | 0.00 | 2.198 | 10.18 | 0.32 | 3.9 | 96.1 | 0.0 | 0.42 | 0.77 | 0.75 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30831 | 3656 | 11 | 94 | 0 | 0 | 0 | logfile |
✘ | 8SHE | 40485 | 2023-12-10 | 2023-04-13 | 2.8 | 3.49 | 2.89 | 3.2 | 0.005 | 0.56 | 0.0 | 0.04 | 14.08 | 0.00 | 1.875 | 6.81 | 0.00 | 3.6 | 96.4 | 0.0 | 1.64 | 0.86 | 0.89 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66179 | 8601 | 49 | 0 | 48 | 19 | 0 | logfile |
✘ | 8SKV | 40568 | 2023-12-13 | 2023-04-20 | 3.1 | 3.28 | 3.10 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 14.90 | 0.00 | 2.020 | 4.46 | 0.08 | 5.9 | 94.0 | 0.1 | -0.35 | 0.67 | 0.75 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23561 | 1632 | 15 | 0 | 15 | 0 | 11341 | logfile |
✘ | 8GA8 | 29892 | 2023-12-12 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 8HPT | 34943 | 2023-12-08 | 2022-12-13 | 3.39 | 3.64 | 3.38 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.89 | 0.01 | 2.212 | 6.51 | 0.40 | 3.4 | 96.6 | 0.0 | 0.29 | 0.72 | 0.81 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7897 | 1094 | 6 | 0 | 1 | 0 | 0 | logfile |