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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7X6Q | 33025 | 2023-12-09 | 2022-03-08 | 4.5 | 4.41 | 4.61 | 4.3 | 0.009 | 0.73 | 0.0 | 0.06 | 9.96 | 0.00 | 2.197 | 0.93 | 0.01 | 3.2 | 96.7 | 0.2 | -0.87 | 0.78 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64472 | 8440 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8T1J | 40969 | 2023-12-08 | 2023-06-02 | 2.7 | 2.99 | 2.81 | 3.0 | 0.012 | 1.45 | 0.0 | 0.07 | 12.84 | 0.01 | 2.502 | 0.95 | 0.00 | 2.4 | 97.6 | 0.0 | 0.15 | 0.76 | 0.80 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6973 | 840 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-12-08 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RHX | 24470 | 2023-12-13 | 2021-07-19 | 3.23 | 3.49 | 3.31 | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 20.66 | 0.01 | 2.289 | 1.05 | 0.00 | 2.0 | 98.0 | 0.0 | -0.38 | 0.75 | 0.84 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25787 | 1288 | 8 | 168 | 0 | 0 | 12159 | logfile |
✘ | 8D8R | 27255 | 2023-12-07 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.92 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EM4 | 28233 | 2023-12-08 | 2022-09-26 | 2.83 | 3.60 | 2.87 | 2.8 | 0.005 | 0.99 | 0.0 | 0.06 | 11.79 | 0.01 | 2.135 | 1.14 | 0.13 | 4.5 | 95.5 | 0.0 | -0.47 | 0.72 | 0.66 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59410 | 7636 | 6 | 0 | 178 | 0 | 0 | logfile |
✘ | 7YMJ | 33930 | 2023-12-07 | 2022-07-28 | 3.35 | 3.65 | 3.24 | 3.6 | 0.005 | 0.95 | 0.0 | 0.05 | 14.75 | 0.01 | 2.349 | 1.30 | 0.00 | 3.6 | 96.4 | 0.0 | -3.45 | 0.64 | 0.83 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3085 | 396 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7DK4 | 30702 | 2023-12-16 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FCR | 28991 | 2023-12-16 | 2022-12-01 | 4.12 | 4.48 | 4.26 | 4.3 | 0.011 | 0.85 | 0.0 | 0.06 | 12.23 | 0.00 | 2.340 | 1.40 | 0.00 | 1.7 | 98.2 | 0.1 | 0.38 | 0.70 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36931 | 4679 | 13 | 0 | 12 | 0 | 0 | logfile |
✘ | 8GAE | 29895 | 2023-12-16 | 2023-02-22 | 3.3 | 4.66 | 3.24 | 2.4 | 0.016 | 2.11 | 27.0 | 0.12 | 14.87 | 0.02 | 1.904 | 1.55 | 0.05 | 2.0 | 98.0 | 0.0 | -1.76 | 0.92 | 0.81 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35378 | 2175 | 8 | 0 | 8 | 0 | 17630 | logfile |
✘ | 8PVA | 17959 | 2023-12-16 | 2023-07-17 | 4.5 | 3.88 | 4.43 | 3.6 | 0.011 | 1.59 | 4.0 | 0.10 | 22.18 | 0.02 | 1.936 | 1.56 | 3.61 | 3.6 | 96.2 | 0.2 | -1.53 | 0.82 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 141565 | 5585 | 58 | 4555 | 4 | 0 | 0 | logfile |
✘ | 6Co7 | 7542 | 2023-12-16 | 2018-03-12 | 3.07 | 3.22 | — | 3.3 | 0.011 | 1.39 | 0.0 | 0.06 | 14.01 | 0.01 | 2.070 | 1.58 | 0.33 | 5.6 | 94.3 | 0.1 | -2.00 | 0.42 | 0.51 | 3.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35255 | 4244 | 12 | 0 | 75 | 0 | 0 | logfile |
✘ | 8BKB | 16095 | 2023-12-16 | 2022-11-08 | 2.2 | 1.97 | 2.09 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.225 | 1.59 | 1.40 | 1.4 | 98.6 | 0.0 | 4.82 | 0.71 | 0.86 | 6.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35139 | 4128 | 54 | 0 | 6 | 1317 | 0 | logfile |
✘ | 6PW6 | 20500 | 2023-12-11 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.022 | 1.83 | 0.0 | 0.11 | 10.94 | 0.01 | 2.200 | 1.61 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 7USB | 26731 | 2023-12-07 | 2022-04-23 | 3.1 | 3.28 | 3.18 | 3.3 | 0.013 | 1.72 | 0.0 | 0.11 | 10.32 | 0.01 | 2.590 | 1.61 | 1.39 | 5.5 | 94.5 | 0.0 | -0.28 | 0.59 | 0.76 | 5.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1661 | 213 | 3 | 0 | 5 | 0 | 0 | logfile |
✘ | 7EFD | 31084 | 2023-12-07 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PZZ | 20541 | 2023-12-12 | 2019-08-01 | 3.6 | 4.09 | 3.67 | 3.9 | 0.024 | 1.89 | 0.0 | 0.11 | 10.11 | 0.01 | 2.292 | 1.66 | 0.00 | 2.8 | 97.0 | 0.2 | 0.57 | 0.80 | 0.85 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19772 | 2464 | 24 | 0 | 48 | 0 | 0 | logfile |
✘ | 6VQA | 21346 | 2023-12-16 | 2020-02-04 | 3.7 | 4.02 | — | 3.9 | 0.010 | 0.89 | 0.0 | 0.06 | 10.83 | 0.00 | 2.302 | 1.69 | 0.05 | 2.7 | 97.1 | 0.2 | 0.27 | 0.68 | 0.72 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36114 | 4578 | 17 | 0 | 2 | 0 | 0 | logfile |
✘ | 6DMU | 7966 | 2023-12-12 | 2018-06-05 | 4.0 | 4.11 | — | 4.0 | 0.006 | 0.99 | 0.0 | 0.06 | 11.54 | 0.01 | 2.348 | 1.70 | 0.19 | 5.3 | 94.7 | 0.0 | -4.30 | 0.72 | 0.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19636 | 2428 | 8 | 0 | 4 | 0 | 0 | logfile |