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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6WU9 | 21907 | 2023-12-14 | 2020-05-04 | 2.9 | 2.24 | — | 2.7 | 0.011 | 1.15 | 0.0 | 0.06 | 22.78 | 0.01 | 1.989 | 5.73 | 16.81 | 10.7 | 88.9 | 0.3 | -3.84 | 0.70 | 0.84 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 82295 | 2697 | 30 | 2855 | 3 | 0 | 0 | logfile |
✘ | 7V69 | 31739 | 2023-12-09 | 2021-08-20 | 3.4 | 2.24 | — | 2.0 | 0.003 | 0.65 | 0.0 | 0.04 | 12.64 | 0.00 | 2.096 | 13.28 | 0.00 | 2.9 | 97.1 | 0.0 | -2.02 | 0.68 | 0.64 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8539 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VNJ | 32041 | 2023-12-15 | 2021-10-11 | 2.56 | 2.25 | — | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.80 | 0.00 | 2.166 | 5.63 | 0.40 | 5.0 | 95.0 | 0.0 | -0.46 | 0.69 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30661 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 8GKH | 40184 | 2023-12-08 | 2023-03-19 | 2.7 | 2.25 | 2.72 | 2.0 | 0.002 | 1.27 | 0.0 | 0.10 | 22.21 | 0.00 | 1.881 | 5.49 | 0.00 | 1.2 | 98.8 | 0.0 | 3.05 | 0.74 | 0.70 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7570 | 600 | 7 | 125 | 3 | 3 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-12-09 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.72 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8AoX | 15555 | 2023-12-14 | 2022-08-08 | 2.8 | 2.28 | 2.75 | 2.3 | 0.005 | 0.73 | 1.0 | 0.04 | 16.82 | 0.00 | 1.792 | 12.98 | 1.25 | 1.3 | 98.7 | 0.0 | -1.25 | 0.64 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87816 | 10368 | 72 | 0 | 48 | 4848 | 0 | logfile |
✘ | 6NYY | 0552 | 2023-12-11 | 2019-02-12 | 3.0 | 2.29 | 2.98 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.82 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✘ | 7XTQ | 33452 | 2023-12-08 | 2022-05-17 | 3.2 | 2.29 | 3.30 | 2.1 | 0.004 | 0.75 | 0.0 | 0.05 | 12.54 | 0.01 | 2.192 | 5.84 | 0.00 | 3.1 | 96.9 | 0.0 | -0.37 | 0.73 | 0.74 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8010 | 1027 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6XXD | 10647 | 2023-12-10 | 2020-01-27 | 3.22 | 2.31 | — | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 11.45 | 0.00 | 2.647 | 2.40 | 0.00 | 5.7 | 94.3 | 0.0 | -2.51 | 0.70 | 0.68 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14896 | 2000 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2023-12-08 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 13.30 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 7R48 | 14287 | 2023-12-11 | 2022-02-08 | 2.3 | 2.31 | — | 2.3 | 0.008 | 0.85 | 0.0 | 0.85 | 18.97 | 0.01 | 1.924 | 2.56 | 1.24 | 2.1 | 97.9 | 0.0 | 0.80 | 0.74 | 0.91 | 6.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69247 | 8118 | 115 | 0 | 55 | 2124 | 0 | logfile |
✘ | 6XXE | 10648 | 2023-12-10 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8C06 | 16355 | 2023-12-13 | 2022-12-16 | 2.7 | 2.32 | 2.57 | 2.7 | 0.003 | 0.76 | 0.0 | 0.05 | 13.59 | 0.01 | 2.333 | 2.28 | 0.00 | 5.5 | 94.5 | 0.0 | -1.51 | 0.67 | 0.75 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25324 | 3298 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 8ETU | 28599 | 2023-12-14 | 2022-10-17 | 2.8 | 2.33 | 2.89 | 2.1 | 0.005 | 0.92 | 2.0 | 0.05 | 17.82 | 0.01 | 1.580 | 5.60 | 0.06 | 3.5 | 96.5 | 0.0 | -1.69 | 0.73 | 0.79 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28670 | 3656 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 7WYB | 32890 | 2023-12-08 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CE7 | 16600 | 2023-12-09 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-12-11 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 7R45 | 14272 | 2023-12-11 | 2022-02-08 | 2.4 | 2.37 | — | 2.3 | 0.008 | 0.84 | 0.0 | 0.85 | 18.82 | 0.01 | 1.801 | 2.78 | 1.20 | 2.3 | 97.7 | 0.0 | 0.76 | 0.72 | 0.90 | 5.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68195 | 8098 | 115 | 0 | 52 | 1334 | 0 | logfile |
✘ | 8Jii | 36312 | 2023-12-08 | 2023-05-26 | 3.17 | 2.37 | — | 3.4 | 0.006 | 0.84 | 0.0 | 0.05 | 14.12 | 0.00 | 1.963 | 7.59 | 0.10 | 4.6 | 95.4 | 0.0 | -1.97 | 0.74 | 0.78 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9083 | 1144 | 6 | 0 | 3 | 1 | 0 | logfile |
✘ | 6Li9 | 0903 | 2023-12-11 | 2019-12-10 | 2.3 | 2.38 | — | 2.4 | 0.008 | 1.00 | 0.0 | 0.07 | 14.65 | 0.01 | 2.265 | 2.26 | 0.21 | 5.0 | 95.0 | 0.0 | -4.31 | 0.63 | 0.75 | 4.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17988 | 2164 | 22 | 0 | 26 | 246 | 0 | logfile |