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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZDG | 11173 | 2023-12-14 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 9.08 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 6U5Z | 20659 | 2023-12-13 | 2019-08-28 | 3.5 | 3.66 | — | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 9.08 | 0.00 | 2.194 | 6.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.58 | 0.49 | 0.58 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24606 | 3174 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HYD | 0308 | 2023-12-09 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✘ | 6PB1 | 20285 | 2023-12-08 | 2019-06-12 | 2.8 | 3.39 | — | 3.4 | 0.003 | 0.79 | 0.0 | 0.06 | 9.37 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.56 | 0.75 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✘ | 7EoT | 31230 | 2023-12-13 | 2021-04-22 | 3.8 | 4.25 | — | 4.1 | 0.003 | 0.52 | 2.0 | 0.04 | 9.38 | 0.00 | 2.074 | 10.52 | 2.22 | 4.2 | 95.8 | 0.0 | 0.02 | 0.82 | 0.71 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24598 | 3088 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 8F0H | 28757 | 2023-12-07 | 2022-11-02 | 3.18 | 3.63 | 3.09 | 3.5 | 0.003 | 0.50 | 0.0 | 0.04 | 9.40 | 0.00 | 2.256 | 7.02 | 0.38 | 4.0 | 96.0 | 0.0 | -0.58 | 0.74 | 0.80 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4959 | 634 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-12-13 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7WoB | 32647 | 2023-12-16 | 2022-01-21 | 3.25 | 2.88 | — | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 9.46 | 0.00 | 2.243 | 7.02 | 4.57 | 5.0 | 95.0 | 0.0 | -3.68 | 0.85 | 0.77 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35134 | 4476 | 12 | 0 | 38 | 0 | 0 | logfile |
✘ | 5T4D | 8354 | 2023-12-10 | 2016-08-29 | 3.0 | 3.12 | 2.96 | 3.1 | 0.010 | 0.81 | 0.0 | 0.05 | 9.48 | 0.00 | 2.120 | 12.34 | 0.26 | 4.4 | 95.6 | 0.0 | -2.69 | 0.75 | 0.79 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14876 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6NB7 | 0404 | 2023-12-13 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.016 | 1.50 | 1.0 | 0.10 | 9.50 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✘ | 6CRV | 7573 | 2023-12-12 | 2018-03-19 | 3.2 | 3.31 | 3.17 | 3.3 | 0.013 | 1.09 | 0.0 | 0.06 | 9.58 | 0.01 | 2.170 | 4.36 | 0.26 | 4.1 | 95.9 | 0.0 | -3.09 | 0.74 | 0.81 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21036 | 2643 | 15 | 0 | 39 | 0 | 0 | logfile |
✘ | 7KEW | 22841 | 2023-12-10 | 2020-10-13 | 4.16 | 4.63 | — | 4.4 | 0.022 | 1.88 | 3.0 | 0.12 | 9.58 | 0.01 | 2.402 | 0.73 | 0.00 | 3.2 | 96.5 | 0.4 | 0.12 | 0.59 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13173 | 1650 | 21 | 0 | 24 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-12-13 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 6HUo | 0282 | 2023-12-10 | 2018-10-09 | 3.26 | 3.38 | 3.25 | 3.3 | 0.006 | 0.89 | 0.0 | 0.06 | 9.67 | 0.01 | 2.257 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -4.15 | 0.74 | 0.83 | 4.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15227 | 1808 | 16 | 0 | 35 | 0 | 0 | logfile |
✘ | 7WZ1 | 32901 | 2023-12-13 | 2022-02-16 | 3.4 | 2.58 | — | 2.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.69 | 0.00 | 2.212 | 7.59 | 5.40 | 7.6 | 92.4 | 0.0 | -4.14 | 0.74 | 0.73 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24467 | 3092 | 6 | 0 | 28 | 0 | 0 | logfile |
✘ | 6R10 | 4703 | 2023-12-17 | 2019-03-13 | 4.3 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 9.71 | 0.01 | 2.155 | 5.28 | 0.11 | 7.6 | 92.4 | 0.0 | -3.74 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38522 | 5842 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 7LG6 | 23312 | 2023-12-13 | 2021-01-19 | 3.28 | 3.65 | 3.42 | 3.6 | 0.023 | 1.79 | 0.0 | 0.14 | 9.74 | 0.01 | 2.421 | 0.61 | 0.33 | 3.6 | 95.7 | 0.7 | 0.39 | 0.76 | 0.84 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3153 | 66 | 0 | 135 | 0 | 0 | logfile |
✘ | 7NEZ | 12295 | 2023-12-09 | 2021-02-05 | 3.39 | 3.83 | — | 3.7 | 0.009 | 0.80 | 3.0 | 0.06 | 9.75 | 0.00 | 1.958 | 13.83 | 0.67 | 7.0 | 93.0 | 0.0 | -2.47 | 0.59 | 0.73 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12345 | 1576 | 9 | 0 | 5 | 0 | 0 | logfile |
✘ | 6RW6 | 10033 | 2023-12-16 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.16 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |