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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8DCX | 27330 | 2023-12-09 | 2022-06-17 | 2.8 | 3.32 | 3.33 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.195 | 13.47 | 0.00 | 5.4 | 94.6 | 0.1 | -0.04 | 0.48 | 0.60 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U5Z | 20659 | 2023-12-13 | 2019-08-28 | 3.5 | 3.66 | — | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 9.08 | 0.00 | 2.194 | 6.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.58 | 0.49 | 0.58 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24606 | 3174 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-12-09 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QCo | 13898 | 2023-12-15 | 2021-11-24 | 3.7 | 3.89 | 3.86 | 3.7 | 0.006 | 0.93 | 0.0 | 0.05 | 21.64 | 0.02 | 1.932 | 23.52 | 9.61 | 13.9 | 86.0 | 0.2 | -4.15 | 0.72 | 0.69 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90396 | 8812 | 78 | 0 | 462 | 0 | 0 | logfile |
✘ | 7XLB | 33276 | 2023-12-11 | 2022-04-21 | 3.44 | 3.67 | 3.47 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 19.23 | 0.01 | 2.236 | 8.13 | 0.19 | 7.7 | 92.3 | 0.0 | -3.68 | 0.63 | 0.71 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19138 | 2352 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ooL | 3842 | 2023-12-16 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 17.89 | 0.01 | 0.037 | 6.31 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |
✘ | 6L7o | 0849 | 2023-12-16 | 2019-11-02 | 3.2 | 3.37 | — | 3.5 | 0.008 | 1.35 | 0.0 | 2.04 | 50.05 | 0.01 | 1.354 | 12.19 | 0.00 | 5.3 | 94.7 | 0.0 | -2.60 | 0.57 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35037 | 4120 | 34 | 0 | 83 | 0 | 0 | logfile |
✘ | 8FNK | 29316 | 2023-12-15 | 2022-12-27 | 3.7 | 4.05 | 3.77 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 17.78 | 0.00 | 2.198 | 10.18 | 0.32 | 3.9 | 96.1 | 0.0 | 0.42 | 0.77 | 0.75 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30831 | 3656 | 11 | 94 | 0 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2023-12-14 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2023-12-17 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-12-09 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7CK6 | 30382 | 2023-12-08 | 2020-07-15 | 3.4 | 4.40 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.06 | 13.47 | 0.00 | 1.652 | 36.32 | 4.12 | 6.1 | 93.1 | 0.8 | 0.38 | 0.57 | 0.73 | 0.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7460 | 936 | 11 | 0 | 1 | 0 | 0 | logfile |
✘ | 7WB1 | 32392 | 2023-12-09 | 2021-12-15 | 3.7 | 3.09 | — | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 21.51 | 0.00 | 2.046 | 11.12 | 0.00 | 4.7 | 95.2 | 0.1 | 0.55 | 0.83 | 0.75 | 0.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11524 | 960 | 4 | 178 | 0 | 0 | 0 | logfile |
✘ | 7K9X | 22755 | 2023-12-09 | 2020-09-29 | 3.8 | 3.44 | — | 3.7 | 0.008 | 0.96 | 0.0 | 0.05 | 15.20 | 0.01 | 2.254 | 6.36 | 6.12 | 3.8 | 96.2 | 0.0 | -1.99 | 0.79 | 0.81 | 0.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F3D | 28846 | 2023-12-08 | 2022-11-09 | 3.4 | 2.64 | 3.48 | 3.3 | 0.005 | 0.93 | 0.0 | 0.05 | 13.03 | 0.01 | 1.784 | 21.50 | 0.39 | 9.3 | 90.7 | 0.0 | -1.29 | 0.57 | 0.62 | 0.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57846 | 7464 | 18 | 0 | 6 | 0 | 0 | logfile |
✘ | 7N4E | 24148 | 2023-12-15 | 2021-06-04 | 3.8 | 3.85 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 17.75 | 0.01 | 1.705 | 13.32 | 3.45 | 4.3 | 95.7 | 0.0 | -0.65 | 0.78 | 0.77 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29822 | 3559 | 10 | 89 | 3 | 0 | 0 | logfile |
✘ | 7YUM | 34108 | 2023-12-11 | 2022-08-17 | 3.8 | 4.12 | 3.93 | 3.9 | 0.010 | 1.26 | 0.0 | 0.07 | 11.17 | 0.01 | 2.209 | 8.96 | 0.34 | 12.3 | 87.6 | 0.1 | -4.61 | 0.81 | 0.73 | 1.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16576 | 2128 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YFL | 33792 | 2023-12-12 | 2022-07-08 | 3.9 | 4.15 | 3.84 | 4.0 | 0.005 | 0.64 | 0.0 | 0.04 | 16.70 | 0.00 | 2.260 | 9.01 | 0.34 | 7.9 | 91.8 | 0.3 | -0.49 | 0.72 | 0.77 | 1.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19968 | 2778 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 5ZWM | 6972 | 2023-12-08 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 14.46 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2023-12-12 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.64 | 0.00 | 1.956 | 17.39 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |