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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7DX4 | 30895 | 2023-12-08 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 11.25 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 6QG0 | 4543 | 2023-12-16 | 2019-01-10 | 4.15 | 4.29 | 4.10 | 4.3 | 0.009 | 1.40 | 20.0 | 0.08 | 18.07 | 0.00 | 0.775 | 5.30 | 5.91 | 10.0 | 87.6 | 2.4 | -3.14 | 0.56 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36980 | 4742 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6N2Z | 9334 | 2023-12-16 | 2018-11-14 | 3.0 | 3.31 | 3.03 | 3.3 | 0.008 | 1.08 | 0.0 | 0.06 | 10.70 | 0.01 | 0.890 | 9.58 | 0.51 | 3.7 | 96.3 | 0.1 | -2.41 | 0.64 | 0.76 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35051 | 4692 | 27 | 0 | 26 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2023-12-16 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2023-12-08 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NYY | 0552 | 2023-12-11 | 2019-02-12 | 3.0 | 2.29 | 2.98 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.82 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✘ | 6BK8 | 7109 | 2023-12-14 | 2017-11-07 | 3.3 | 3.39 | — | 3.3 | 0.009 | 1.23 | 7.0 | 0.10 | 15.23 | 0.01 | 1.020 | 4.68 | 1.27 | 6.3 | 93.2 | 0.5 | -3.63 | 0.65 | 0.75 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 82745 | 9975 | 53 | 433 | 249 | 0 | 0 | logfile |
✘ | 5H1S | 9572 | 2023-12-15 | 2016-10-11 | 3.5 | 3.54 | — | 3.5 | 0.010 | 1.06 | 1.0 | 0.07 | 24.81 | 0.01 | 1.028 | 46.50 | 3.21 | 16.7 | 81.7 | 1.6 | -4.90 | 0.78 | 0.77 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90825 | 3276 | 32 | 3018 | 0 | 0 | 0 | logfile |
✘ | 6iGM | 9668 | 2023-12-13 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.78 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✘ | 5GJQ | 9511 | 2023-12-16 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2023-12-12 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.11 | 16.89 | 0.01 | 1.112 | 25.56 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2023-12-09 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.69 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2023-12-16 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-12-08 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 7KEJ | 22839 | 2023-12-10 | 2020-10-11 | 3.8 | 3.55 | — | 3.6 | 0.021 | 1.73 | 0.0 | 0.11 | 9.85 | 0.01 | 1.201 | 0.59 | 0.00 | 0.4 | 99.6 | 0.0 | 1.20 | 0.82 | 0.84 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13806 | 1740 | 18 | 0 | 24 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-12-13 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2023-12-09 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.75 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 6QoZ | 4610 | 2023-12-11 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JB9 | 6413 | 2023-12-14 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 17.72 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✘ | 7D73 | 30600 | 2023-12-16 | 2020-10-02 | 3.0 | 2.48 | — | 2.7 | 0.011 | 1.23 | 7.0 | 0.07 | 19.93 | 0.01 | 1.302 | 10.00 | 10.36 | 6.3 | 93.4 | 0.3 | -3.01 | 0.55 | 0.71 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35292 | 4495 | 24 | 0 | 12 | 0 | 0 | logfile |