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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EX7 | 28653 | 2023-12-07 | 2022-10-24 | 3.53 | 3.77 | 3.48 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 13.31 | 0.01 | 2.211 | 6.36 | 0.00 | 4.2 | 95.8 | 0.0 | 0.68 | 0.59 | 0.76 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3177 | 414 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YVL | 34131 | 2023-12-07 | 2022-08-19 | 3.3 | 3.44 | 3.21 | 3.4 | 0.011 | 1.16 | 5.0 | 0.07 | 12.98 | 0.01 | 2.155 | 18.66 | 1.42 | 9.0 | 90.6 | 0.5 | -4.93 | 0.57 | 0.77 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3224 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WRL | 32732 | 2023-12-07 | 2022-01-27 | 3.51 | 3.69 | — | 3.6 | 0.006 | 1.03 | 0.0 | 0.06 | 14.71 | 0.01 | 2.289 | 5.84 | 0.00 | 13.4 | 86.6 | 0.0 | -4.19 | 0.64 | 0.78 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3251 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YVM | 34132 | 2023-12-07 | 2022-08-19 | 3.5 | 3.56 | 3.31 | 3.6 | 0.009 | 1.38 | 6.0 | 0.09 | 13.48 | 0.01 | 2.166 | 28.59 | 1.57 | 8.9 | 90.6 | 0.5 | -4.19 | 0.55 | 0.72 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3126 | 420 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D8R | 27255 | 2023-12-07 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.92 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-12-07 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A7T | 15225 | 2023-12-07 | 2022-06-21 | 3.0 | 2.93 | 3.07 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 8.48 | 0.00 | 2.302 | 5.04 | 0.00 | 2.8 | 97.2 | 0.0 | -4.48 | 0.39 | 0.85 | 4.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3702 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-12-07 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.42 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7EFD | 31084 | 2023-12-07 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 3A5X | 1641 | 2023-12-07 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WR7 | 32717 | 2023-12-07 | 2022-01-26 | 3.1 | 3.81 | — | 3.8 | 0.005 | 0.60 | 0.0 | 0.04 | 10.29 | 0.00 | 2.309 | 10.13 | 3.29 | 9.1 | 90.9 | 0.0 | -4.53 | 0.72 | 0.72 | 2.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3995 | 496 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 7UUZ | 26807 | 2023-12-07 | 2022-04-29 | 3.2 | 3.25 | 1.51 | 3.2 | 0.006 | 0.57 | 0.0 | 0.04 | 13.54 | 0.00 | 2.186 | 5.97 | 0.51 | 5.9 | 94.1 | 0.0 | 1.14 | 0.62 | 0.78 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3786 | 501 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 7FiL | 31602 | 2023-12-07 | 2021-07-31 | 3.0 | 2.84 | — | 3.6 | 0.008 | 1.05 | 2.0 | 0.06 | 18.46 | 0.01 | 2.213 | 19.35 | 8.76 | 7.7 | 91.1 | 1.2 | -1.82 | 0.71 | 0.75 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3993 | 504 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-12-07 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7Y7W | 33672 | 2023-12-07 | 2022-06-22 | 2.4 | 2.70 | 2.46 | 2.7 | 0.006 | 0.78 | 0.0 | 0.08 | 17.20 | 0.00 | 1.907 | 5.88 | 1.11 | 3.0 | 97.0 | 0.0 | 0.06 | 0.68 | 0.85 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4310 | 529 | 1 | 0 | 7 | 48 | 0 | logfile |
✘ | 8Do3 | 27589 | 2023-12-07 | 2022-07-12 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4185 | 534 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8K6L | 36922 | 2023-12-07 | 2023-07-25 | 2.92 | 3.27 | 2.96 | 3.2 | 0.005 | 1.00 | 1.0 | 0.09 | 17.75 | 0.02 | 2.297 | 6.71 | 2.17 | 5.0 | 95.0 | 0.0 | -2.44 | 0.63 | 0.80 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4155 | 547 | 3 | 0 | 4 | 0 | 0 | logfile |
✘ | 7SLP | 25197 | 2023-12-07 | 2021-10-24 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.22 | 1.0 | 0.07 | 18.74 | 0.01 | 2.221 | 7.09 | 1.77 | 4.2 | 95.3 | 0.5 | -3.76 | 0.62 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5176 | 561 | 4 | 37 | 0 | 0 | 0 | logfile |
✘ | 8HNB | 34909 | 2023-12-07 | 2022-12-07 | 3.53 | 4.14 | 3.49 | 4.0 | 0.007 | 1.35 | 2.0 | 0.08 | 14.65 | 0.02 | 2.382 | 14.25 | 2.09 | 2.3 | 97.7 | 0.0 | -0.66 | 0.58 | 0.74 | 1.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4083 | 562 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 6NT5 | 0502 | 2023-12-07 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.59 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |