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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6UXA | 20931 | 2023-12-09 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-12-07 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.42 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2023-12-15 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.004 | 0.62 | 3.0 | 0.05 | 11.10 | 0.00 | 2.233 | 3.79 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✘ | 7B1G | 11985 | 2023-12-12 | 2020-11-24 | 3.6 | 3.70 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.05 | 15.84 | 0.00 | 2.213 | 12.50 | 0.09 | 7.4 | 92.6 | 0.0 | -2.22 | 0.79 | 0.85 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21661 | 2689 | 9 | 0 | 8 | 0 | 0 | logfile |
✘ | 6UXB | 20932 | 2023-12-09 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-12-13 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 8DDR | 27339 | 2023-12-15 | 2022-06-18 | 3.2 | 2.96 | 3.18 | 3.2 | 0.015 | 0.94 | 0.0 | 0.07 | 11.80 | 0.00 | 2.251 | 5.05 | 1.77 | 3.3 | 96.7 | 0.0 | 1.33 | 0.82 | 0.82 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32074 | 3872 | 12 | 0 | 78 | 0 | 0 | logfile |
✘ | 7YHP | 33835 | 2023-12-07 | 2022-07-14 | 3.1 | 3.03 | 3.01 | 3.1 | 0.008 | 0.55 | 0.0 | 0.04 | 19.25 | 0.00 | 2.216 | 6.19 | 1.81 | 4.1 | 95.9 | 0.0 | 0.44 | 0.68 | 0.76 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3815 | 374 | 4 | 38 | 1 | 0 | 0 | logfile |
✘ | 7DK4 | 30702 | 2023-12-16 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZN2 | 14799 | 2023-12-15 | 2022-04-20 | 4.29 | 3.73 | 4.16 | 3.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.12 | 0.00 | 2.048 | 7.87 | 0.00 | 3.5 | 96.5 | 0.0 | -1.30 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89393 | 11481 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-12-13 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 6NMA | 0445 | 2023-12-09 | 2019-01-10 | 3.38 | 3.71 | — | 3.7 | 0.009 | 0.78 | 0.0 | 0.05 | 15.68 | 0.00 | 1.973 | 10.70 | 8.09 | 11.0 | 89.0 | 0.1 | -4.94 | 0.65 | 0.78 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12404 | 1435 | 6 | 25 | 2 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2023-12-17 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EoT | 31230 | 2023-12-13 | 2021-04-22 | 3.8 | 4.25 | — | 4.1 | 0.003 | 0.52 | 2.0 | 0.04 | 9.38 | 0.00 | 2.074 | 10.52 | 2.22 | 4.2 | 95.8 | 0.0 | 0.02 | 0.82 | 0.71 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24598 | 3088 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 7VPZ | 32077 | 2023-12-15 | 2021-10-18 | 4.14 | 4.38 | 4.16 | 4.1 | 0.005 | 0.79 | 1.0 | 0.05 | 18.73 | 0.00 | 1.887 | 6.54 | 0.52 | 3.6 | 96.3 | 0.0 | -0.02 | 0.81 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30593 | 3474 | 14 | 173 | 9 | 0 | 0 | logfile |
✘ | 5T4D | 8354 | 2023-12-10 | 2016-08-29 | 3.0 | 3.12 | 2.96 | 3.1 | 0.010 | 0.81 | 0.0 | 0.05 | 9.48 | 0.00 | 2.120 | 12.34 | 0.26 | 4.4 | 95.6 | 0.0 | -2.69 | 0.75 | 0.79 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14876 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 7AP9 | 11851 | 2023-12-15 | 2020-10-16 | 3.01 | 3.70 | — | 3.2 | 0.008 | 0.68 | 0.0 | 0.05 | 12.01 | 0.00 | 2.023 | 4.33 | 2.91 | 6.9 | 93.1 | 0.0 | -0.45 | 0.90 | 0.88 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30881 | 3782 | 14 | 11 | 5 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-12-10 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.79 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-12-09 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6XWR | 10636 | 2023-12-09 | 2020-01-24 | 3.22 | 3.96 | — | 3.7 | 0.008 | 0.75 | 0.0 | 0.05 | 12.81 | 0.00 | 2.122 | 11.13 | 0.00 | 5.7 | 94.3 | 0.0 | -2.71 | 0.74 | 0.85 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9564 | 1278 | 3 | 0 | 0 | 0 | 0 | logfile |