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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7E0K | 30935 | 2023-12-08 | 2021-01-28 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8044 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✘ | 8CVP | 27012 | 2023-12-09 | 2022-05-18 | 3.4 | 3.75 | 3.50 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.05 | 0.00 | 2.231 | 4.87 | 0.12 | 6.1 | 93.8 | 0.1 | -1.69 | 0.69 | 0.74 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10112 | 1484 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VZG | 32228 | 2023-12-12 | 2021-11-16 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22458 | 2402 | 25 | 0 | 119 | 6 | 0 | logfile |
✘ | 7WMP | 32616 | 2023-12-16 | 2022-01-15 | 3.6 | 3.34 | — | 3.3 | 0.005 | 0.79 | 0.0 | 0.05 | 16.33 | 0.00 | 2.038 | 7.53 | 1.32 | 7.4 | 92.6 | 0.0 | -2.54 | 0.71 | 0.85 | 1.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.65 | — | — | — | 1.10 | 98184 | 12204 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 6DMU | 7966 | 2023-12-12 | 2018-06-05 | 4.0 | 4.11 | — | 4.0 | 0.006 | 0.99 | 0.0 | 0.06 | 11.54 | 0.01 | 2.348 | 1.70 | 0.19 | 5.3 | 94.7 | 0.0 | -4.30 | 0.72 | 0.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19636 | 2428 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6MHZ | 9124 | 2023-12-08 | 2018-09-18 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7112 | 908 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VNJ | 32041 | 2023-12-15 | 2021-10-11 | 2.56 | 2.25 | — | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.80 | 0.00 | 2.166 | 5.63 | 0.40 | 5.0 | 95.0 | 0.0 | -0.46 | 0.69 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30661 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 7BP9 | 30148 | 2023-12-16 | 2020-03-21 | 3.6 | 3.66 | — | 3.6 | 0.009 | 1.26 | 0.0 | 0.08 | 14.69 | 0.01 | 2.215 | 9.40 | 0.47 | 5.0 | 94.8 | 0.1 | -3.34 | 0.78 | 0.78 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35214 | 4440 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7BP8 | 30147 | 2023-12-16 | 2020-03-21 | 3.9 | 4.00 | — | 3.9 | 0.008 | 1.38 | 0.0 | 0.08 | 15.25 | 0.01 | 2.313 | 5.30 | 0.18 | 5.3 | 94.7 | 0.0 | -3.18 | 0.80 | 0.80 | 1.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35190 | 4440 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-12-07 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FYB | 29563 | 2023-12-10 | 2023-01-25 | 3.1 | 3.33 | 3.15 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 20.88 | 0.00 | 2.211 | 12.15 | 0.09 | 3.6 | 96.4 | 0.0 | 0.63 | 0.71 | 0.78 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13486 | 1359 | 10 | 136 | 0 | 0 | 0 | logfile |
✘ | 7X6Q | 33025 | 2023-12-09 | 2022-03-08 | 4.5 | 4.41 | 4.61 | 4.3 | 0.009 | 0.73 | 0.0 | 0.06 | 9.96 | 0.00 | 2.197 | 0.93 | 0.01 | 3.2 | 96.7 | 0.2 | -0.87 | 0.78 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64472 | 8440 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RW6 | 10033 | 2023-12-16 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.16 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E2Y | 30972 | 2023-12-08 | 2021-02-07 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6987 | 868 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8H38 | 34455 | 2023-12-17 | 2022-10-08 | 4.25 | 4.19 | 4.35 | 4.3 | 0.004 | 0.70 | 2.0 | 0.05 | 13.05 | 0.00 | 1.986 | 10.28 | 2.22 | 6.5 | 92.8 | 0.7 | -0.18 | 0.62 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37306 | 4639 | 15 | 0 | 4 | 0 | 0 | logfile |
✘ | 7MDY | 23784 | 2023-12-11 | 2021-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19595 | 1263 | 6 | 0 | 4 | 0 | 9862 | logfile |
✘ | 7N4E | 24148 | 2023-12-15 | 2021-06-04 | 3.8 | 3.85 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 17.75 | 0.01 | 1.705 | 13.32 | 3.45 | 4.3 | 95.7 | 0.0 | -0.65 | 0.78 | 0.77 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29822 | 3559 | 10 | 89 | 3 | 0 | 0 | logfile |
✘ | 7VGS | 31978 | 2023-12-10 | 2021-09-18 | 2.8 | 3.28 | — | 3.3 | 0.002 | 0.66 | 0.0 | 0.04 | 12.19 | 0.01 | 2.230 | 9.89 | 0.38 | 7.0 | 93.0 | 0.0 | -1.16 | 0.67 | 0.75 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9700 | 1254 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2023-12-10 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 10.43 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 7o6E | 12738 | 2023-12-16 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |