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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6VM2 | 21236 | 2023-12-10 | 2020-01-27 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15355 | 1815 | 15 | 0 | 20 | 0 | 0 | logfile |
✘ | 7M6P | 23703 | 2023-12-10 | 2021-03-26 | 3.28 | 3.97 | 3.27 | 3.8 | 0.008 | 1.27 | 5.0 | 0.08 | 12.69 | 0.01 | 2.293 | 5.19 | 0.00 | 3.1 | 96.9 | 0.0 | 0.26 | 0.78 | 0.79 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14650 | 1800 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 6UD3 | 20731 | 2023-12-10 | 2019-09-18 | 3.5 | 4.06 | 3.46 | 3.8 | 0.018 | 1.60 | 0.0 | 0.11 | 12.05 | 0.01 | 2.293 | 7.45 | 0.00 | 4.6 | 95.4 | 0.0 | -1.90 | 0.79 | 0.78 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14346 | 1765 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 7DWZ | 30890 | 2023-12-13 | 2021-01-18 | 3.3 | 3.37 | — | 3.3 | 0.012 | 1.03 | 0.0 | 0.09 | 17.98 | 0.01 | 1.909 | 25.24 | 12.63 | 10.2 | 86.4 | 3.5 | -4.12 | 0.70 | 0.75 | 1.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24598 | 3019 | 28 | 0 | 71 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-12-08 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UUZ | 26807 | 2023-12-07 | 2022-04-29 | 3.2 | 3.25 | 1.51 | 3.2 | 0.006 | 0.57 | 0.0 | 0.04 | 13.54 | 0.00 | 2.186 | 5.97 | 0.51 | 5.9 | 94.1 | 0.0 | 1.14 | 0.62 | 0.78 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3786 | 501 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 7CZU | 30517 | 2023-12-15 | 2020-09-09 | 3.4 | 3.49 | — | 3.4 | 0.011 | 1.00 | 0.0 | 0.07 | 17.50 | 0.01 | 1.945 | 20.35 | 11.32 | 10.1 | 88.8 | 1.1 | -3.75 | 0.66 | 0.75 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31120 | 3878 | 31 | 0 | 70 | 0 | 0 | logfile |
✘ | 7XLB | 33276 | 2023-12-11 | 2022-04-21 | 3.44 | 3.67 | 3.47 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 19.23 | 0.01 | 2.236 | 8.13 | 0.19 | 7.7 | 92.3 | 0.0 | -3.68 | 0.63 | 0.71 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19138 | 2352 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6H68 | 0147 | 2023-12-16 | 2018-07-26 | 4.6 | 4.70 | — | 4.6 | 0.005 | 0.84 | 0.0 | 0.05 | 11.63 | 0.01 | 2.243 | 6.67 | 0.05 | 7.3 | 92.7 | 0.0 | -3.73 | 0.72 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37103 | 4497 | 22 | 67 | 6 | 0 | 0 | logfile |
✘ | 7X08 | 32920 | 2023-12-16 | 2022-02-21 | 2.7 | 2.78 | — | 2.8 | 0.009 | 0.96 | 0.0 | 0.10 | 16.94 | 0.01 | 1.910 | 14.34 | 10.68 | 8.4 | 90.6 | 0.9 | -2.76 | 0.63 | 0.76 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36396 | 4572 | 36 | 0 | 81 | 0 | 0 | logfile |
✘ | 7SiP | 25147 | 2023-12-08 | 2021-10-14 | 3.0 | 3.27 | — | 3.3 | 0.011 | 1.17 | 0.0 | 0.04 | 17.47 | 0.01 | 2.313 | 3.17 | 0.00 | 0.9 | 99.1 | 0.0 | 0.93 | 0.63 | 0.81 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7560 | 892 | 12 | 0 | 36 | 20 | 0 | logfile |
✘ | 6PZZ | 20541 | 2023-12-12 | 2019-08-01 | 3.6 | 4.09 | 3.67 | 3.9 | 0.024 | 1.89 | 0.0 | 0.11 | 10.11 | 0.01 | 2.292 | 1.66 | 0.00 | 2.8 | 97.0 | 0.2 | 0.57 | 0.80 | 0.85 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19772 | 2464 | 24 | 0 | 48 | 0 | 0 | logfile |
✘ | 7DXE | 30906 | 2023-12-12 | 2021-01-18 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22280 | 2740 | 8 | 0 | 20 | 0 | 0 | logfile |
✘ | 7CZP | 30512 | 2023-12-15 | 2020-09-09 | 3.0 | 3.04 | — | 3.0 | 0.011 | 1.03 | 0.0 | 0.08 | 17.81 | 0.01 | 1.981 | 21.67 | 13.35 | 11.4 | 86.7 | 1.9 | -3.91 | 0.69 | 0.77 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30946 | 3862 | 33 | 0 | 74 | 0 | 0 | logfile |
✘ | 7KEW | 22841 | 2023-12-10 | 2020-10-13 | 4.16 | 4.63 | — | 4.4 | 0.022 | 1.88 | 3.0 | 0.12 | 9.58 | 0.01 | 2.402 | 0.73 | 0.00 | 3.2 | 96.5 | 0.4 | 0.12 | 0.59 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13173 | 1650 | 21 | 0 | 24 | 0 | 0 | logfile |
✘ | 7SCB | 25032 | 2023-12-17 | 2021-09-27 | 2.5 | 3.49 | 2.56 | 3.0 | 0.007 | 1.51 | 3.0 | 0.08 | 17.11 | 0.02 | 2.465 | 3.44 | 2.69 | 3.6 | 96.2 | 0.2 | -4.74 | 0.88 | 0.84 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37229 | 4743 | 54 | 0 | 25 | 0 | 0 | logfile |
✘ | 7ZJE | 14746 | 2023-12-11 | 2022-04-10 | 3.12 | 3.70 | 3.28 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 11.99 | 0.00 | 2.254 | 7.29 | 0.19 | 8.3 | 91.1 | 0.5 | 0.64 | 0.66 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19284 | 2380 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2023-12-15 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F1K | 28791 | 2023-12-15 | 2022-11-05 | 2.8 | 3.72 | 2.83 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 15.01 | 0.00 | 2.130 | 4.40 | 1.30 | 2.3 | 97.7 | 0.0 | 0.58 | 0.88 | 0.82 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30854 | 3689 | 14 | 95 | 3 | 10 | 0 | logfile |
✘ | 7E7o | 31001 | 2023-12-10 | 2021-02-26 | 3.4 | 3.48 | — | 3.4 | 0.008 | 1.11 | 0.0 | 0.05 | 17.00 | 0.01 | 2.006 | 10.56 | 2.13 | 12.0 | 87.4 | 0.7 | -3.57 | 0.70 | 0.84 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15816 | 2003 | 4 | 0 | 21 | 0 | 0 | logfile |