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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8ADW | 15372 | 2023-12-08 | 2022-07-11 | 2.95 | 2.93 | 2.87 | 3.0 | 0.009 | 1.46 | 0.0 | 0.07 | 22.42 | 0.01 | 2.469 | 8.01 | 23.33 | 7.7 | 92.3 | 0.0 | -4.02 | 0.51 | 0.80 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6920 | 990 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-12-11 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-12-08 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 7SAR | 24954 | 2023-12-09 | 2021-09-23 | 3.2 | 3.05 | — | 3.5 | 0.005 | 0.80 | 0.0 | 0.07 | 13.63 | 0.01 | 2.157 | 15.13 | 0.00 | 11.3 | 88.7 | 0.0 | -3.51 | 0.50 | 0.76 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11420 | 1350 | 20 | 0 | 40 | 0 | 0 | logfile |
✘ | 8CE7 | 16600 | 2023-12-09 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EJ6 | 31153 | 2023-12-08 | 2021-04-01 | 3.21 | 3.47 | — | 3.3 | 0.008 | 1.03 | 1.0 | 0.05 | 16.92 | 0.00 | 2.019 | 51.68 | 1.13 | 12.1 | 87.2 | 0.7 | -4.78 | 0.59 | 0.89 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7584 | 948 | 7 | 9 | 6 | 0 | 0 | logfile |
✘ | 8AZU | 15772 | 2023-12-13 | 2022-09-06 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.07 | — | — | 4.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23856 | 3108 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BD3 | 15973 | 2023-12-10 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✘ | 8A7T | 15225 | 2023-12-07 | 2022-06-21 | 3.0 | 2.93 | 3.07 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 8.48 | 0.00 | 2.302 | 5.04 | 0.00 | 2.8 | 97.2 | 0.0 | -4.48 | 0.39 | 0.85 | 4.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3702 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 5LJV | 4062 | 2023-12-10 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2023-12-07 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 6BNP | 7116 | 2023-12-08 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 7P7J | 13237 | 2023-12-17 | 2021-07-19 | 2.7 | 2.61 | — | 2.3 | 0.005 | 0.77 | 0.0 | 1.47 | 15.31 | 0.01 | 2.212 | 4.92 | 1.25 | 2.4 | 97.5 | 0.0 | -0.28 | 0.91 | 0.90 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37448 | 4719 | 24 | 0 | 28 | 0 | 0 | logfile |
✘ | 7Uii | 26546 | 2023-12-12 | 2022-03-29 | 2.6 | 2.91 | 2.65 | 2.9 | 0.003 | 0.61 | 0.0 | 0.05 | 13.58 | 0.00 | 2.234 | 5.76 | 0.00 | 5.1 | 94.9 | 0.0 | -0.77 | 0.60 | 0.87 | 4.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130944 | 16926 | 93 | 0 | 186 | 186 | 0 | logfile |
✘ | 3J9Q | 6270 | 2023-12-16 | 2015-02-17 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.24 | — | — | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iX0 | 35785 | 2023-12-08 | 2023-03-31 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 8oPN | 17077 | 2023-12-14 | 2023-04-07 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28543 | 3555 | 13 | 0 | 40 | 0 | 0 | logfile |
✘ | 8Do4 | 27590 | 2023-12-12 | 2022-07-12 | 3.2 | 3.38 | 3.21 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.00 | 2.056 | 12.09 | 1.54 | 3.4 | 96.6 | 0.0 | -0.40 | 0.69 | 0.68 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20163 | 2625 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RoD | 24592 | 2023-12-14 | 2021-07-30 | 3.8 | 4.39 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.05 | 11.72 | 0.01 | 2.388 | 12.51 | 0.00 | 4.3 | 95.7 | 0.0 | 2.79 | 0.69 | 0.87 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139258 | 19082 | 203 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EiR | 28162 | 2023-12-07 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |