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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6UXA | 20931 | 2023-12-09 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-12-07 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.42 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-12-11 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6Hio | 0226 | 2023-12-11 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 7WU3 | 32818 | 2023-12-08 | 2022-02-05 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7877 | 1013 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 5Z96 | 6901 | 2023-12-12 | 2018-02-02 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21494 | 2665 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 7VG3 | 31964 | 2023-12-08 | 2021-09-14 | 3.73 | 3.86 | — | 3.8 | 0.006 | 1.15 | 2.0 | 0.06 | 15.38 | 0.01 | 1.935 | 7.51 | 5.13 | 10.8 | 88.7 | 0.6 | -4.51 | 0.80 | 0.84 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8118 | 860 | 4 | 62 | 3 | 0 | 0 | logfile |
✘ | 6NYY | 0552 | 2023-12-11 | 2019-02-12 | 3.0 | 2.29 | 2.98 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.82 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✘ | 8DDX | 27345 | 2023-12-16 | 2022-06-19 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35500 | 4295 | 14 | 0 | 81 | 0 | 0 | logfile |
✘ | 6HUo | 0282 | 2023-12-10 | 2018-10-09 | 3.26 | 3.38 | 3.25 | 3.3 | 0.006 | 0.89 | 0.0 | 0.06 | 9.67 | 0.01 | 2.257 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -4.15 | 0.74 | 0.83 | 4.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15227 | 1808 | 16 | 0 | 35 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2023-12-17 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-12-13 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 15.53 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-12-13 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7WU4 | 32819 | 2023-12-08 | 2022-02-05 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6887 | 888 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VPZ | 32077 | 2023-12-15 | 2021-10-18 | 4.14 | 4.38 | 4.16 | 4.1 | 0.005 | 0.79 | 1.0 | 0.05 | 18.73 | 0.00 | 1.887 | 6.54 | 0.52 | 3.6 | 96.3 | 0.0 | -0.02 | 0.81 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30593 | 3474 | 14 | 173 | 9 | 0 | 0 | logfile |
✘ | 7KSQ | 23023 | 2023-12-16 | 2020-11-23 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36553 | 3347 | 42 | 0 | 219 | 45 | 0 | logfile |
✘ | 6TF9 | 10491 | 2023-12-10 | 2019-11-13 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6ZB4 | 11144 | 2023-12-13 | 2020-06-06 | 3.03 | 3.12 | 3.02 | 3.1 | 0.007 | 0.69 | 0.0 | 0.05 | 16.16 | 0.01 | 1.814 | 4.85 | 3.84 | 8.2 | 91.7 | 0.1 | -4.11 | 0.75 | 0.83 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24841 | 3133 | 7 | 0 | 30 | 0 | 0 | logfile |
✘ | 6FSZ | 4301 | 2023-12-17 | 2018-02-20 | 4.6 | 4.95 | — | 4.7 | 0.010 | 1.25 | 0.0 | 0.06 | 10.87 | 0.01 | 2.147 | 13.08 | 0.26 | 7.3 | 92.7 | 0.0 | -3.42 | 0.88 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36972 | 4821 | 15 | 23 | 11 | 0 | 0 | logfile |
✘ | 6NMA | 0445 | 2023-12-09 | 2019-01-10 | 3.38 | 3.71 | — | 3.7 | 0.009 | 0.78 | 0.0 | 0.05 | 15.68 | 0.00 | 1.973 | 10.70 | 8.09 | 11.0 | 89.0 | 0.1 | -4.94 | 0.65 | 0.78 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12404 | 1435 | 6 | 25 | 2 | 0 | 0 | logfile |