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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8J7V | 36050 | 2023-12-09 | 2023-04-28 | 2.79 | 2.88 | 2.79 | 2.8 | 0.004 | 0.73 | 0.0 | 0.05 | 16.71 | 0.01 | 2.208 | 7.08 | 1.54 | 3.3 | 96.7 | 0.0 | 0.39 | 0.62 | 0.79 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11083 | 1432 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZNJ | 14803 | 2023-12-16 | 2022-04-21 | 2.4 | 2.51 | 2.47 | 2.5 | 0.004 | 0.82 | 0.0 | 0.05 | 17.52 | 0.01 | 2.092 | 3.02 | 0.83 | 1.1 | 98.9 | 0.0 | -1.45 | 0.70 | 0.77 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35088 | 4242 | 36 | 36 | 12 | 0 | 0 | logfile |
✘ | 6o72 | 0638 | 2023-12-14 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 16.34 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 7VQ5 | 32086 | 2023-12-08 | 2021-10-19 | 3.1 | 3.31 | — | 3.3 | 0.009 | 0.77 | 0.0 | 0.05 | 14.85 | 0.00 | 2.110 | 7.38 | 0.14 | 7.4 | 92.6 | 0.0 | -3.56 | 0.66 | 0.84 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6315 | 800 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7YHP | 33835 | 2023-12-07 | 2022-07-14 | 3.1 | 3.03 | 3.01 | 3.1 | 0.008 | 0.55 | 0.0 | 0.04 | 19.25 | 0.00 | 2.216 | 6.19 | 1.81 | 4.1 | 95.9 | 0.0 | 0.44 | 0.68 | 0.76 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3815 | 374 | 4 | 38 | 1 | 0 | 0 | logfile |
✘ | 6ZDG | 11173 | 2023-12-14 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 9.08 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 7QDS | 13925 | 2023-12-10 | 2021-11-30 | 3.8 | 3.53 | 3.57 | 3.7 | 0.005 | 0.86 | 1.0 | 0.05 | 14.59 | 0.01 | 2.067 | 14.28 | 0.00 | 5.7 | 94.3 | 0.0 | -0.33 | 0.80 | 0.82 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13798 | 1771 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PP6 | 20420 | 2023-12-15 | 2019-07-05 | 4.28 | 4.54 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.43 | 0.00 | 2.179 | 3.17 | 0.00 | 0.6 | 99.4 | 0.0 | -1.13 | 0.79 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32106 | 2062 | 13 | 0 | 12 | 0 | 16126 | logfile |
✘ | 6NSK | 0499 | 2023-12-08 | 2019-01-24 | 2.7 | 2.82 | 2.55 | 3.1 | 0.009 | 1.11 | 0.0 | 0.06 | 14.60 | 0.01 | 2.213 | 4.78 | 0.00 | 3.6 | 96.4 | 0.0 | -3.23 | 0.62 | 0.77 | 5.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 6MZU | 9307 | 2023-12-15 | 2018-11-05 | 3.4 | 3.56 | — | 3.5 | 0.006 | 0.72 | 0.0 | 0.05 | 8.11 | 0.01 | 2.309 | 6.63 | 0.03 | 2.5 | 97.5 | 0.0 | -4.73 | 0.78 | 0.85 | 4.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XX2 | 33498 | 2023-12-16 | 2022-05-28 | 3.6 | 3.49 | 3.64 | 3.3 | 0.006 | 0.95 | 4.0 | 0.06 | 14.51 | 0.01 | 2.033 | 16.70 | 1.27 | 9.9 | 90.0 | 0.0 | -1.28 | 0.86 | 0.82 | 1.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36436 | 4528 | 11 | 0 | 5 | 0 | 0 | logfile |
✘ | 7Ji3 | 22343 | 2023-12-08 | 2020-07-22 | 3.46 | 4.28 | — | 4.0 | 0.005 | 0.79 | 0.0 | 0.05 | 13.46 | 0.01 | 2.365 | 6.77 | 0.00 | 3.6 | 96.4 | 0.0 | -5.13 | 0.64 | 0.72 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6000 | 777 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CX2 | 30489 | 2023-12-08 | 2020-09-01 | 2.8 | 3.21 | — | 3.1 | 0.004 | 0.71 | 0.0 | 0.05 | 13.64 | 0.01 | 1.994 | 8.54 | 0.12 | 3.7 | 96.3 | 0.0 | -2.13 | 0.69 | 0.82 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7930 | 1020 | 6 | 0 | 1 | 1 | 0 | logfile |
✘ | 6RW9 | 10035 | 2023-12-15 | 2019-06-04 | 3.27 | 3.69 | — | 3.3 | 0.008 | 1.09 | 0.0 | 0.06 | 9.91 | 0.01 | 2.258 | 6.01 | 0.37 | 6.7 | 93.2 | 0.0 | -3.60 | 0.85 | 0.80 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88700 | 11425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6L7E | 0843 | 2023-12-16 | 2019-11-01 | 3.2 | 3.28 | — | 3.2 | 0.004 | 0.78 | 0.0 | 0.05 | 8.54 | 0.01 | 2.217 | 3.24 | 0.05 | 3.3 | 96.7 | 0.0 | -4.72 | 0.78 | 0.85 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97400 | 12270 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6CB8 | 7449 | 2023-12-16 | 2018-02-02 | 3.8 | 4.11 | — | 4.7 | 0.006 | 0.84 | 0.0 | 0.05 | 11.71 | 0.01 | 1.542 | 37.90 | 0.00 | 18.6 | 81.4 | 0.0 | -5.72 | 0.54 | 0.27 | 0.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100224 | 6210 | 27 | 0 | 27 | 0 | 50436 | logfile |
✘ | 7TBY | 25801 | 2023-12-10 | 2021-12-22 | 4.0 | 4.05 | 3.80 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 13.87 | 0.00 | 2.155 | 7.36 | 0.00 | 5.0 | 95.0 | 0.0 | -2.45 | 0.70 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13281 | 1788 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 7o85 | 12761 | 2023-12-14 | 2021-04-14 | 3.3 | 3.50 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.51 | 0.00 | 1.470 | 7.44 | 0.00 | 3.3 | 96.7 | 0.0 | -0.25 | 0.71 | 0.75 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28525 | 3843 | 28 | 0 | 14 | 0 | 0 | logfile |
✘ | 6PW9 | 20501 | 2023-12-08 | 2019-07-22 | 4.03 | 4.12 | — | 4.1 | 0.007 | 1.23 | 0.0 | 0.24 | 15.09 | 0.01 | 1.781 | 6.70 | 1.81 | 4.4 | 95.6 | 0.0 | -4.47 | 0.71 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8836 | 1075 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-12-09 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |