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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7V9A | 31813 | 2023-12-11 | 2021-08-24 | 3.94 | 3.46 | — | 3.4 | 0.002 | 0.58 | 0.0 | 0.03 | 18.68 | 0.00 | 2.260 | 6.87 | 0.00 | 5.2 | 94.8 | 0.0 | -4.05 | 0.66 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16876 | 1723 | 10 | 146 | 0 | 0 | 0 | logfile |
✘ | 8G9X | 29881 | 2023-12-11 | 2023-02-22 | 4.46 | 7.28 | 4.57 | 4.4 | 0.008 | 1.32 | 2.0 | 0.07 | 14.80 | 0.01 | 2.188 | 9.75 | 0.00 | 9.0 | 90.9 | 0.2 | -4.84 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17036 | 1983 | 53 | 0 | 111 | 0 | 0 | logfile |
✘ | 8HH6 | 34753 | 2023-12-13 | 2022-11-16 | 2.9 | 3.16 | 3.03 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 13.71 | 0.00 | 2.002 | 5.07 | 0.00 | 2.3 | 97.7 | 0.0 | 1.53 | 0.80 | 0.89 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24277 | 3129 | 13 | 0 | 13 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2023-12-07 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-12-07 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FCR | 28991 | 2023-12-16 | 2022-12-01 | 4.12 | 4.48 | 4.26 | 4.3 | 0.011 | 0.85 | 0.0 | 0.06 | 12.23 | 0.00 | 2.340 | 1.40 | 0.00 | 1.7 | 98.2 | 0.1 | 0.38 | 0.70 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36931 | 4679 | 13 | 0 | 12 | 0 | 0 | logfile |
✘ | 7WWJ | 32867 | 2023-12-14 | 2022-02-13 | 3.5 | 4.15 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.05 | 13.50 | 0.00 | 2.202 | 8.64 | 0.00 | 3.2 | 96.8 | 0.0 | 0.07 | 0.83 | 0.87 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26915 | 3367 | 24 | 0 | 43 | 0 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-12-09 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.72 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8D8R | 27255 | 2023-12-07 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.92 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-12-12 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-12-08 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YMJ | 33930 | 2023-12-07 | 2022-07-28 | 3.35 | 3.65 | 3.24 | 3.6 | 0.005 | 0.95 | 0.0 | 0.05 | 14.75 | 0.01 | 2.349 | 1.30 | 0.00 | 3.6 | 96.4 | 0.0 | -3.45 | 0.64 | 0.83 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3085 | 396 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EX7 | 28653 | 2023-12-07 | 2022-10-24 | 3.53 | 3.77 | 3.48 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 13.31 | 0.01 | 2.211 | 6.36 | 0.00 | 4.2 | 95.8 | 0.0 | 0.68 | 0.59 | 0.76 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3177 | 414 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7NAF | 24271 | 2023-12-11 | 2021-06-21 | 3.13 | 3.14 | 3.06 | 3.1 | 0.005 | 0.62 | 0.0 | 0.03 | 20.38 | 0.01 | 2.172 | 7.07 | 0.00 | 4.2 | 95.8 | 0.0 | 0.43 | 0.70 | 0.78 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18868 | 1342 | 17 | 378 | 0 | 2 | 0 | logfile |
✘ | 7WP8 | 32678 | 2023-12-08 | 2022-01-23 | 3.88 | 4.14 | — | 4.1 | 0.008 | 1.01 | 2.0 | 0.11 | 14.51 | 0.01 | 2.250 | 7.91 | 0.00 | 9.0 | 90.9 | 0.1 | -4.12 | 0.69 | 0.80 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6797 | 861 | 9 | 0 | 3 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-12-07 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 6LN6 | 0925 | 2023-12-08 | 2019-12-28 | 2.9 | 3.03 | 2.87 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 12.49 | 0.00 | 2.035 | 6.53 | 0.00 | 2.0 | 98.0 | 0.0 | -3.94 | 0.65 | 0.82 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7836 | 1010 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 8EU9 | 28609 | 2023-12-14 | 2022-10-18 | 3.48 | 2.61 | 3.59 | 2.9 | 0.006 | 1.06 | 0.0 | 0.06 | 17.26 | 0.01 | 1.528 | 5.67 | 0.00 | 3.6 | 96.4 | 0.0 | -1.81 | 0.73 | 0.77 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28517 | 3660 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 8JZS | 36752 | 2023-12-08 | 2023-07-06 | 2.95 | 3.15 | 2.92 | 3.2 | 0.008 | 0.93 | 0.0 | 0.06 | 13.27 | 0.01 | 2.299 | 10.90 | 0.00 | 4.4 | 95.2 | 0.4 | 0.71 | 0.69 | 0.82 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7500 | 972 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8GNB | 34159 | 2023-12-10 | 2022-08-23 | 3.9 | 5.27 | 4.76 | 5.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.92 | 0.01 | 2.231 | 14.24 | 0.00 | 5.1 | 94.9 | 0.0 | -0.65 | 0.53 | 0.62 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15770 | 2010 | 10 | 0 | 0 | 0 | 0 | logfile |