Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6PV6	20486	2023-05-07	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.47	0.31	11.0	88.9	0.1	-4.72	0.60	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	5TAV	8386	2023-05-07	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	5TAT	8384	2023-05-07	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.77	0.01	1.373	4.75	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	7JMJ	22396	2023-05-07	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.90	0.62	11.3	88.5	0.3	-4.67	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMG	22393	2023-05-07	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.38	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMH	22394	2023-05-07	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.43	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	5TAY	8389	2023-05-07	2016-09-10	4.6	4.71	4.77	4.5	0.004	0.86	4.0	0.05	9.86	0.01	1.374	4.89	0.46	10.4	89.4	0.2	-4.90	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121276	13500	12	0	3712	0	0	logfile
✘	5GMK	9525	2023-05-11	2016-07-14	3.4	3.52	—	3.5	0.012	1.25	16.0	0.07	13.99	0.01	1.378	19.35	2.77	7.7	91.2	1.0	-3.71	0.47	0.53	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75273	8026	51	404	981	0	0	logfile
✘	6Q2R	20578	2023-05-13	2019-08-08	4.3	4.92	—	4.6	0.004	0.82	0.0	0.05	8.43	0.01	1.384	4.86	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30392	3800	16	0	40	0	0	logfile
✘	5ADY	3133	2023-05-16	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.89	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97364	4197	35	3020	2	0	0	logfile
✘	6MN7	9166	2023-05-09	2018-10-01	4.8	5.01	—	5.0	0.016	2.23	12.0	0.12	10.62	0.02	1.395	35.74	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile
✘	5M5W	3446	2023-05-14	2016-10-23	3.8	3.89	—	3.9	0.003	0.62	4.0	0.05	12.18	0.00	1.405	11.80	1.35	4.3	95.6	0.1	-4.15	0.68	0.68	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34780	4271	21	43	7	0	0	logfile
✘	7U5H	26350	2023-05-16	2022-03-02	3.32	3.20	3.49	3.3	0.006	0.94	12.0	0.07	14.00	0.01	1.424	10.04	5.32	3.2	96.8	0.0	-0.50	0.64	0.77	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39192	5064	24	0	24	0	0	logfile
✘	7S4K	24829	2023-05-17	2021-09-09	2.36	2.82	—	2.6	0.009	1.05	3.0	0.05	18.91	0.00	1.448	13.70	3.29	5.4	94.4	0.2	0.71	0.74	0.82	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22589	2577	27	0	63	110	0	logfile
✘	7DBH	30631	2023-05-04	2020-10-20	3.6	4.18	—	3.4	0.007	0.74	1.0	0.05	28.88	0.00	1.451	11.99	0.17	3.2	96.8	0.0	0.54	0.91	0.85	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10631	697	10	252	0	0	0	logfile
✘	7CWL	30482	2023-05-13	2020-08-29	3.8	4.03	—	3.8	0.009	1.09	4.0	0.07	10.20	0.01	1.462	24.00	1.07	7.6	92.0	0.4	-3.59	0.71	0.63	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30638	3900	12	0	27	0	0	logfile
✘	6J6Q	0692	2023-05-12	2019-01-15	3.7	3.85	—	3.7	0.008	0.99	0.0	0.09	14.74	0.01	1.463	18.21	2.93	4.9	94.2	0.9	-3.65	0.62	0.66	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80535	9167	50	549	15	0	0	logfile
✘	7o85	12761	2023-05-12	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28525	3843	28	0	14	0	0	logfile
✘	8G6X	29787	2023-05-15	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93873	3177	72	3037	252	3462	0	logfile
✘	3J8H	2807	2023-05-04	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.49	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111160	12796	12	0	2276	0	0	logfile

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