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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SK1 | 25169 | 2024-01-17 | 2021-10-19 | 3.43 | 3.92 | 3.64 | 4.0 | 0.009 | 1.07 | 0.0 | 0.06 | 12.81 | 0.01 | 2.254 | 1.39 | 0.43 | 3.8 | 96.2 | 0.0 | 1.09 | 0.59 | 0.73 | 1.99 | 4.0 | 0.006 | 1.22 | 1.0 | 0.05 | 15.73 | 0.01 | 2.256 | 8.11 | 2.83 | 5.4 | 94.6 | 0.0 | 0.21 | 0.62 | 0.58 | 0.73 | 0.71 | 4291 | 524 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2024-01-17 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 24.99 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.003 | 0.92 | 0.0 | 0.05 | 17.35 | 0.00 | 2.201 | 16.81 | 5.19 | 2.8 | 97.2 | 0.0 | 3.26 | 0.50 | 0.42 | 0.64 | -0.08 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7XoM | 33352 | 2024-01-17 | 2022-05-01 | 3.2 | 3.57 | 3.19 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.30 | 0.00 | 2.175 | 10.99 | 0.02 | 0.9 | 99.1 | 0.0 | 2.16 | 0.87 | 0.86 | 1.74 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.16 | 0.00 | 2.138 | 12.09 | 0.99 | 1.1 | 98.9 | 0.0 | 2.04 | 1.28 | 0.88 | 0.88 | 1.58 | 54129 | 7336 | 15 | 0 | 32 | 0 | 0 | logfile |
✔ | 6XLY | 22252 | 2024-01-17 | 2020-06-29 | 3.1 | 4.00 | 3.11 | 3.5 | 0.006 | 0.95 | 0.0 | 0.05 | 15.47 | 0.01 | 2.336 | 4.00 | 0.97 | 4.3 | 95.7 | 0.0 | -5.77 | 0.86 | 0.77 | 1.71 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.59 | 0.00 | 2.160 | 11.59 | 1.56 | 3.0 | 97.0 | 0.0 | 0.51 | 0.57 | 0.88 | 0.84 | 1.47 | 5111 | 646 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DE7 | 27386 | 2024-01-17 | 2022-06-20 | 3.27 | 4.01 | 3.23 | 3.8 | 0.006 | 1.05 | 0.0 | 0.06 | 16.51 | 0.01 | 2.304 | 8.39 | 0.90 | 2.1 | 97.9 | 0.0 | 4.08 | 0.61 | 0.78 | 1.97 | 3.8 | 0.004 | 0.94 | 0.0 | 0.04 | 17.01 | 0.00 | 2.069 | 15.36 | 4.04 | 2.5 | 97.5 | 0.0 | 2.33 | 0.96 | 0.55 | 0.74 | 0.60 | 4168 | 526 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7K1V | 22630 | 2024-01-17 | 2020-09-08 | 4.6 | 4.95 | — | 4.8 | 0.008 | 1.12 | 0.0 | 0.06 | 15.77 | 0.01 | 2.159 | 13.77 | 0.40 | 11.0 | 89.0 | 0.0 | -4.04 | 0.71 | 0.71 | — | 4.7 | 0.004 | 0.76 | 0.0 | 0.05 | 14.29 | 0.01 | 2.112 | 31.24 | 0.20 | 9.1 | 90.9 | 0.0 | -1.60 | 1.45 | 0.72 | 0.77 | — | 4971 | 626 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXA | 28656 | 2024-01-17 | 2022-10-25 | 3.14 | 3.45 | 3.09 | 3.4 | 0.004 | 0.54 | 0.0 | 0.03 | 22.12 | 0.00 | 2.223 | 15.79 | 0.40 | 3.6 | 96.4 | 0.0 | 0.27 | 0.61 | 0.69 | 4.07 | 3.4 | 0.003 | 0.50 | 0.0 | 0.03 | 22.11 | 0.00 | 2.215 | 15.37 | 3.64 | 3.0 | 97.0 | 0.0 | 0.25 | 0.30 | 0.60 | 0.68 | 3.53 | 5539 | 341 | 4 | 139 | 0 | 0 | 0 | logfile |
✔ | 7QL1 | 14060 | 2024-01-17 | 2021-12-19 | 3.34 | 3.41 | 3.13 | 3.4 | 0.011 | 2.01 | 0.0 | 0.10 | 11.06 | 0.01 | 2.654 | 0.29 | 0.00 | 7.5 | 92.5 | 0.0 | -3.09 | 0.42 | 0.83 | 4.57 | 3.4 | 0.004 | 0.74 | 0.0 | 0.05 | 15.06 | 0.00 | 2.262 | 8.51 | 3.12 | 3.3 | 96.7 | 0.0 | -2.38 | 1.66 | 0.38 | 0.81 | 4.29 | 1671 | 219 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2024-01-17 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.61 | 0.0 | 0.07 | 25.64 | 0.02 | 1.977 | 4.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.96 | 0.0 | 0.05 | 27.65 | 0.01 | 1.738 | 53.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.75 | 0.66 | 0.81 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 8DE8 | 27387 | 2024-01-17 | 2022-06-20 | 2.82 | 3.75 | 2.73 | 3.6 | 0.006 | 1.63 | 0.0 | 0.05 | 17.89 | 0.01 | 2.200 | 6.01 | 0.43 | 2.6 | 97.4 | 0.0 | 2.28 | 0.67 | 0.81 | 1.66 | 3.6 | 0.005 | 0.87 | 0.0 | 0.04 | 18.18 | 0.00 | 2.077 | 8.63 | 2.16 | 3.5 | 96.2 | 0.4 | 3.31 | 1.48 | 0.56 | 0.78 | 2.10 | 4498 | 552 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2024-01-17 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 25.90 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 27.41 | 0.01 | 1.783 | 37.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 8TJ2 | 41298 | 2024-01-17 | 2023-07-20 | 3.0 | 3.23 | 3.05 | 3.2 | 0.006 | 0.79 | 0.0 | 0.05 | 13.71 | 0.01 | 1.823 | 8.53 | 1.67 | 3.5 | 96.5 | 0.0 | -1.17 | 0.63 | 0.84 | 3.97 | 3.2 | 0.004 | 0.67 | 0.0 | 0.04 | 14.65 | 0.00 | 1.858 | 7.35 | 2.53 | 6.0 | 94.0 | 0.0 | -0.98 | 0.45 | 0.62 | 0.84 | 3.48 | 54252 | 3744 | 18 | 0 | 0 | 0 | 26460 | logfile |
✔ | 7W4P | 32311 | 2024-01-17 | 2021-11-28 | 3.19 | 2.52 | — | 3.2 | 0.006 | 0.75 | 0.0 | 0.05 | 12.28 | 0.01 | 2.166 | 4.69 | 2.18 | 2.8 | 97.1 | 0.1 | -0.24 | 0.80 | 0.80 | 2.05 | 3.1 | 0.005 | 0.75 | 3.0 | 0.04 | 14.80 | 0.01 | 1.858 | 9.28 | 2.13 | 3.2 | 96.7 | 0.1 | 1.49 | 1.97 | 0.81 | 0.83 | 2.11 | 54408 | 6904 | 16 | 0 | 24 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2024-01-17 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.90 | 0.00 | 2.192 | 16.63 | 0.00 | 10.2 | 89.3 | 0.4 | -2.86 | 2.17 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2024-01-17 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.66 | 0.0 | 0.03 | 17.85 | 0.00 | 2.198 | 6.54 | 2.34 | 3.2 | 96.8 | 0.0 | 1.40 | 0.77 | 0.27 | 0.78 | 2.51 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SC7 | 25028 | 2024-01-17 | 2021-09-27 | 2.8 | 3.66 | — | 3.3 | 0.007 | 1.08 | 1.0 | 0.06 | 14.60 | 0.01 | 2.240 | 6.50 | 1.49 | 2.4 | 97.6 | 0.0 | -1.25 | 0.73 | 0.87 | 1.85 | 3.2 | 0.004 | 0.91 | 0.0 | 0.05 | 16.57 | 0.00 | 2.044 | 21.20 | 3.09 | 2.9 | 97.1 | 0.0 | 1.01 | 1.24 | 0.72 | 0.88 | 1.68 | 107930 | 13756 | 156 | 0 | 72 | 0 | 0 | logfile |
✔ | 7VQ7 | 32087 | 2024-01-17 | 2021-10-19 | 3.6 | 3.68 | — | 3.7 | 0.007 | 0.75 | 0.0 | 0.04 | 16.81 | 0.00 | 2.070 | 11.39 | 4.87 | 3.9 | 96.1 | 0.0 | -1.30 | 0.61 | 0.81 | 2.00 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 17.91 | 0.00 | 2.181 | 8.16 | 3.24 | 2.5 | 97.5 | 0.0 | 3.68 | 1.25 | 0.58 | 0.79 | 1.19 | 6127 | 778 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7BZY | 30263 | 2024-01-17 | 2020-04-29 | 3.7 | 5.07 | 3.67 | 2.9 | 0.005 | 1.03 | 0.0 | 0.05 | 7.60 | 0.00 | 2.175 | 11.89 | 0.00 | 15.0 | 84.6 | 0.3 | -5.26 | 0.62 | 0.47 | — | 3.4 | 0.003 | 0.82 | 0.0 | 0.05 | 6.08 | 0.00 | 2.106 | 13.54 | 0.00 | 14.3 | 85.7 | 0.0 | -3.30 | 1.23 | 0.85 | 0.74 | — | 6169 | 1260 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P14 | 13155 | 2024-01-17 | 2021-07-01 | 3.66 | 3.82 | 3.50 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 18.55 | 0.00 | 2.295 | 7.45 | 0.00 | 2.7 | 97.3 | 0.0 | 1.11 | 0.60 | 0.78 | 2.82 | 3.8 | 0.004 | 0.57 | 0.0 | 0.04 | 17.68 | 0.00 | 2.264 | 10.71 | 3.02 | 4.5 | 95.5 | 0.0 | 2.79 | 0.44 | 0.61 | 0.79 | 1.80 | 3796 | 454 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 8C03 | 16354 | 2024-01-17 | 2022-12-15 | 3.89 | 4.09 | 3.71 | 4.1 | 0.007 | 0.86 | 0.0 | 0.04 | 12.87 | 0.00 | 1.232 | 8.74 | 3.06 | 2.8 | 97.2 | 0.0 | 2.75 | 0.56 | 0.76 | 1.69 | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 16.22 | 0.00 | 2.173 | 14.66 | 3.06 | 1.9 | 98.1 | 0.0 | 2.48 | 1.49 | 0.56 | 0.78 | 1.07 | 3330 | 429 | 1 | 0 | 1 | 0 | 0 | logfile |