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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TCP | 25816 | 2024-01-20 | 2021-12-27 | 3.84 | 3.97 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.03 | 9.57 | 0.00 | 2.327 | 4.21 | 1.26 | 2.8 | 97.2 | 0.0 | 2.66 | 0.70 | 0.81 | 2.29 | 3.9 | 0.006 | 0.60 | 0.0 | 0.04 | 12.89 | 0.00 | 2.125 | 6.46 | 2.46 | 4.0 | 96.0 | 0.0 | 1.96 | 0.27 | 0.71 | 0.83 | 2.42 | 14992 | 1912 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7R9E | 24324 | 2024-01-18 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 9.20 | 0.00 | 2.116 | 9.58 | 0.74 | 5.6 | 94.4 | 0.0 | -0.19 | 2.08 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 6NEQ | 9358 | 2024-01-19 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 16.68 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 19.20 | 0.00 | 2.059 | 13.20 | 1.83 | 5.0 | 94.9 | 0.1 | -0.39 | 2.04 | 0.85 | 0.85 | 1.40 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 8E41 | 27876 | 2024-01-19 | 2022-08-17 | 2.13 | 2.86 | 2.57 | 2.6 | 0.005 | 0.38 | 1.0 | 0.02 | 22.46 | 0.02 | 1.983 | 1.89 | 0.85 | 5.2 | 94.8 | 0.0 | 0.82 | 0.73 | 0.90 | 5.26 | 2.6 | 0.005 | 0.58 | 1.0 | 0.04 | 22.37 | 0.01 | 1.983 | 3.26 | 1.91 | 5.8 | 94.1 | 0.1 | 0.21 | 0.22 | 0.73 | 0.91 | 5.30 | 115744 | 1186 | 12 | 3016 | 1 | 0 | 41833 | logfile |
✔ | 8C92 | 16499 | 2024-01-17 | 2023-01-21 | 3.79 | 4.24 | 4.02 | 3.8 | 0.002 | 0.38 | 0.0 | 0.03 | 21.88 | 0.00 | 1.872 | 5.69 | 0.00 | 4.5 | 95.4 | 0.1 | 0.46 | 0.83 | 0.79 | 1.60 | 3.8 | 0.004 | 0.58 | 0.0 | 0.03 | 22.52 | 0.00 | 2.005 | 17.56 | 4.18 | 7.7 | 92.3 | 0.0 | -1.06 | 0.56 | 0.84 | 0.84 | 1.79 | 53489 | 1700 | 17 | 1873 | 0 | 0 | 0 | logfile |
✔ | 7R9o | 24330 | 2024-01-18 | 2021-06-29 | 4.0 | 4.66 | — | 4.0 | 0.002 | 0.38 | 0.0 | 0.04 | 4.49 | 0.00 | 2.252 | 2.85 | 0.25 | 10.5 | 88.7 | 0.8 | -4.93 | 0.83 | 0.71 | — | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 10.99 | 0.00 | 1.927 | 12.17 | 0.98 | 3.0 | 97.0 | 0.0 | -0.48 | 3.45 | 0.88 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 8C90 | 16497 | 2024-01-19 | 2023-01-21 | 3.15 | 3.51 | 3.31 | 3.1 | 0.002 | 0.38 | 0.0 | 0.03 | 21.87 | 0.00 | 1.866 | 5.45 | 0.00 | 5.1 | 94.8 | 0.0 | 0.48 | 0.79 | 0.79 | 1.77 | 3.2 | 0.005 | 0.67 | 1.0 | 0.04 | 22.27 | 0.00 | 2.015 | 13.35 | 4.06 | 7.9 | 92.1 | 0.0 | -0.86 | 0.49 | 0.81 | 0.84 | 1.77 | 64726 | 2183 | 22 | 2219 | 0 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2024-01-20 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.9 | 0.007 | 1.10 | 0.0 | 0.09 | 14.86 | 0.00 | 2.156 | 11.87 | 0.00 | 20.1 | 79.9 | 0.0 | -3.21 | 2.77 | 0.87 | 0.64 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 7oNL | 12997 | 2024-01-20 | 2021-05-25 | 3.9 | 3.35 | 3.58 | 3.6 | 0.002 | 0.38 | 0.0 | 0.04 | 9.17 | 0.00 | 2.180 | 5.51 | 0.41 | 1.5 | 98.5 | 0.0 | 2.97 | 0.64 | 0.80 | 2.02 | 3.6 | 0.004 | 0.84 | 0.0 | 0.04 | 13.75 | 0.00 | 2.094 | 11.26 | 3.05 | 1.5 | 98.5 | 0.0 | 2.31 | 0.55 | 0.64 | 0.81 | 1.43 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2024-01-17 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.009 | 0.69 | 0.0 | 0.06 | 19.10 | 0.00 | 2.285 | 4.76 | 4.65 | 9.4 | 90.6 | 0.0 | -1.72 | 1.12 | 0.51 | 0.89 | 6.72 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QHP | 18415 | 2024-01-17 | 2023-09-08 | 2.8 | 3.49 | 2.82 | 3.3 | 0.002 | 0.38 | 0.0 | 0.04 | 11.64 | 0.00 | 2.176 | 6.09 | 0.00 | 1.0 | 99.0 | 0.0 | 1.77 | 0.76 | 0.86 | 4.14 | 3.3 | 0.002 | 0.46 | 0.0 | 0.04 | 14.74 | 0.00 | 2.182 | 7.06 | 0.98 | 1.2 | 98.8 | 0.0 | 2.54 | 0.85 | 0.74 | 0.84 | 3.33 | 6788 | 820 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SQV | 25396 | 2024-01-17 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 16.22 | 0.00 | 2.300 | 1.47 | 1.25 | 1.1 | 98.9 | 0.0 | 1.75 | 1.99 | 0.77 | 0.90 | 3.89 | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✔ | 8E42 | 27877 | 2024-01-19 | 2022-08-17 | 2.29 | 2.95 | 2.61 | 2.7 | 0.005 | 0.38 | 0.0 | 0.07 | 22.64 | 0.02 | 1.931 | 1.94 | 0.53 | 4.0 | 96.0 | 0.0 | 0.92 | 0.73 | 0.91 | 4.67 | 2.7 | 0.005 | 0.60 | 0.0 | 0.04 | 22.58 | 0.01 | 1.793 | 3.31 | 0.53 | 5.2 | 94.8 | 0.0 | 0.17 | 0.30 | 0.72 | 0.91 | 4.90 | 115718 | 1179 | 11 | 3016 | 2 | 0 | 41815 | logfile |
✔ | 7R9M | 24329 | 2024-01-18 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 9.14 | 0.00 | 2.094 | 8.93 | 0.74 | 3.0 | 97.0 | 0.0 | -0.06 | 1.73 | 0.86 | 0.78 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 7oZP | 13131 | 2024-01-17 | 2021-06-28 | 3.8 | 4.17 | 3.83 | 4.0 | 0.002 | 0.39 | 0.0 | 0.04 | 14.04 | 0.00 | 1.969 | 4.71 | 0.00 | 2.1 | 97.9 | 0.0 | 1.24 | 0.79 | 0.71 | 0.86 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 16.99 | 0.01 | 2.021 | 19.76 | 4.07 | 4.9 | 95.1 | 0.0 | -0.17 | 1.00 | 0.84 | 0.80 | 1.22 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 7Xo0 | 33332 | 2024-01-17 | 2022-04-30 | 3.0 | 2.48 | 1.85 | 3.1 | 0.001 | 0.39 | 0.0 | 0.05 | 16.62 | 0.00 | 2.280 | 4.76 | 0.00 | 5.0 | 95.0 | 0.0 | -2.66 | 0.47 | 0.87 | 7.11 | 3.1 | 0.005 | 0.49 | 0.0 | 0.05 | 17.10 | 0.00 | 2.237 | 6.29 | 2.71 | 9.2 | 90.8 | 0.0 | -2.93 | 0.30 | 0.47 | 0.88 | 6.95 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oZo | 13130 | 2024-01-17 | 2021-06-28 | 3.8 | 4.06 | 3.82 | 3.9 | 0.002 | 0.39 | 0.0 | 0.04 | 14.07 | 0.00 | 1.993 | 4.62 | 0.00 | 2.1 | 97.9 | 0.0 | 1.21 | 0.79 | 0.71 | 0.70 | 3.9 | 0.003 | 0.71 | 0.0 | 0.05 | 16.89 | 0.00 | 2.129 | 15.52 | 2.81 | 3.6 | 96.4 | 0.0 | -0.14 | 1.27 | 0.82 | 0.78 | 0.99 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2024-01-18 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 12.13 | 0.00 | 2.074 | 15.64 | 0.02 | 4.4 | 95.5 | 0.1 | -0.24 | 1.84 | 0.68 | 0.66 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2024-01-18 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.10 | 0.00 | 2.093 | 12.74 | 0.00 | 3.6 | 96.4 | 0.1 | -0.22 | 1.82 | 0.64 | 0.64 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BFA | 16018 | 2024-01-17 | 2022-10-24 | 3.0 | 3.05 | 3.02 | 3.3 | 0.002 | 0.39 | 0.0 | 0.05 | 13.94 | 0.00 | 2.592 | 6.46 | 0.00 | 0.0 | 100.0 | 0.0 | -3.13 | 0.47 | 0.82 | 5.29 | 3.2 | 0.005 | 0.54 | 0.0 | 0.05 | 17.34 | 0.00 | 2.120 | 7.90 | 1.07 | 3.1 | 96.9 | 0.0 | -2.25 | 1.03 | 0.53 | 0.88 | 6.68 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |