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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DNG | 27566 | 2024-01-19 | 2022-07-11 | 3.0 | 3.19 | 3.01 | 3.2 | 0.004 | 0.61 | 0.0 | 0.05 | 15.29 | 0.00 | 2.029 | 11.14 | 2.15 | 3.2 | 96.8 | 0.0 | 0.46 | 0.53 | 0.67 | 2.03 | 3.2 | 0.005 | 0.96 | 1.0 | 0.05 | 16.28 | 0.00 | 1.743 | 8.81 | 3.35 | 2.6 | 97.4 | 0.0 | -0.20 | 0.51 | 0.65 | 0.77 | 2.12 | 10218 | 1308 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7SS5 | 25404 | 2024-01-17 | 2021-11-09 | 2.7 | 3.48 | 2.63 | 3.2 | 0.003 | 0.63 | 2.0 | 0.05 | 19.81 | 0.00 | 2.179 | 8.80 | 0.00 | 3.1 | 96.9 | 0.0 | 0.76 | 0.51 | 0.75 | 3.88 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 21.72 | 0.00 | 2.113 | 9.38 | 0.89 | 2.8 | 97.2 | 0.0 | 1.81 | 3.21 | 0.51 | 0.87 | 2.59 | 6927 | 676 | 10 | 48 | 6 | 593 | 0 | logfile |
✔ | 6E7B | 8997 | 2024-01-17 | 2018-07-25 | 3.5 | 3.67 | 3.28 | 3.7 | 0.006 | 0.83 | 0.0 | 0.04 | 11.89 | 0.00 | 2.009 | 5.71 | 0.14 | 6.5 | 93.5 | 0.0 | -4.13 | 0.56 | 0.76 | 2.80 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 15.96 | 0.00 | 1.941 | 16.14 | 4.25 | 3.7 | 96.3 | 0.0 | -1.51 | 0.97 | 0.58 | 0.80 | 2.50 | 6774 | 854 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2024-01-19 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.95 | 0.0 | 0.05 | 11.14 | 0.00 | 1.944 | 12.48 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 1.958 | 9.11 | 1.44 | 4.4 | 95.6 | 0.0 | 0.01 | 2.17 | 0.32 | 0.82 | 1.56 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6WQ0 | 21867 | 2024-01-18 | 2020-04-28 | 2.8 | 2.89 | — | 2.9 | 0.007 | 0.71 | 0.0 | 0.04 | 15.92 | 0.01 | 2.210 | 4.29 | 0.00 | 1.6 | 98.4 | 0.0 | -0.40 | 0.60 | 0.90 | 4.25 | 2.9 | 0.003 | 0.58 | 0.0 | 0.03 | 16.55 | 0.00 | 2.267 | 4.74 | 1.59 | 0.5 | 99.5 | 0.0 | 3.29 | 1.55 | 0.58 | 0.89 | 3.77 | 57467 | 6026 | 48 | 602 | 0 | 0 | 0 | logfile |
✔ | 7KCH | 22808 | 2024-01-19 | 2020-10-05 | 4.33 | 4.50 | 4.30 | 4.3 | 0.011 | 1.07 | 0.0 | 0.06 | 16.55 | 0.01 | 2.175 | 19.21 | 4.72 | 10.5 | 89.5 | 0.0 | -4.19 | 0.49 | 0.52 | — | 4.3 | 0.002 | 0.69 | 0.0 | 0.04 | 14.04 | 0.00 | 1.956 | 10.89 | 0.00 | 5.7 | 94.3 | 0.0 | 0.09 | 1.54 | 0.58 | 0.83 | — | 12248 | 1805 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 8W8R | 37357 | 2024-01-18 | 2023-09-04 | 3.3 | 3.13 | 3.14 | 3.2 | 0.006 | 0.82 | 0.0 | 0.06 | 16.73 | 0.00 | 2.227 | 7.59 | 1.64 | 5.2 | 94.8 | 0.0 | -0.20 | 0.68 | 0.85 | 2.57 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 17.08 | 0.00 | 2.088 | 4.57 | 2.77 | 4.3 | 95.7 | 0.0 | 0.21 | 0.26 | 0.65 | 0.85 | 2.45 | 9018 | 1142 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6V7B | 21094 | 2024-01-18 | 2019-12-08 | 3.4 | 3.51 | — | 3.4 | 0.008 | 0.84 | 0.0 | 0.05 | 18.33 | 0.01 | 2.234 | 4.03 | 0.11 | 3.1 | 96.9 | 0.0 | -6.34 | 0.58 | 0.88 | 2.82 | 3.4 | 0.004 | 0.66 | 0.0 | 0.04 | 18.76 | 0.00 | 1.965 | 10.90 | 4.74 | 3.4 | 96.6 | 0.0 | 1.74 | 1.54 | 0.58 | 0.89 | 2.11 | 58277 | 5635 | 48 | 646 | 0 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2024-01-18 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.73 | 1.0 | 0.14 | 24.21 | 0.01 | 1.955 | 121.88 | 20.00 | 43.0 | 57.0 | 0.0 | -6.80 | 1.44 | 0.64 | 0.85 | 2.89 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D14 | 27115 | 2024-01-18 | 2022-05-26 | 2.51 | 2.45 | 2.49 | 2.6 | 0.004 | 0.57 | 0.0 | 0.05 | 13.46 | 0.00 | 2.064 | 5.73 | 0.32 | 1.1 | 98.9 | 0.0 | 1.45 | 0.66 | 0.87 | 4.65 | 2.5 | 0.005 | 0.64 | 0.0 | 0.05 | 16.01 | 0.00 | 1.834 | 3.95 | 1.49 | 1.4 | 98.6 | 0.0 | 1.14 | 0.35 | 0.65 | 0.89 | 5.15 | 9225 | 1113 | 9 | 0 | 9 | 426 | 0 | logfile |
✔ | 6WKX | 21812 | 2024-01-19 | 2020-04-17 | 4.2 | 4.31 | — | 4.2 | 0.006 | 0.59 | 0.0 | 0.04 | 15.11 | 0.00 | 2.298 | 2.52 | 0.00 | 0.0 | 100.0 | 0.0 | -3.67 | 0.77 | 0.90 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 16.66 | 0.00 | 2.199 | 7.21 | 0.00 | 0.0 | 100.0 | 0.0 | 4.60 | 0.98 | 0.77 | 0.88 | — | 12915 | 1575 | 105 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FSJ | 29419 | 2024-01-19 | 2023-01-10 | 3.65 | 3.93 | 3.70 | 3.9 | 0.004 | 0.69 | 0.0 | 0.05 | 16.99 | 0.00 | 1.974 | 7.82 | 0.00 | 6.3 | 93.7 | 0.0 | -1.15 | 0.70 | 0.74 | 1.70 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 14.27 | 0.00 | 2.119 | 9.44 | 2.96 | 6.1 | 93.9 | 0.0 | -1.09 | 0.99 | 0.71 | 0.75 | 1.55 | 9855 | 1257 | 16 | 0 | 28 | 0 | 0 | logfile |
✔ | 6WKY | 21813 | 2024-01-18 | 2020-04-17 | 4.2 | 4.29 | — | 4.1 | 0.006 | 0.74 | 0.0 | 0.05 | 16.88 | 0.00 | 2.366 | 8.91 | 0.00 | 0.6 | 99.4 | 0.0 | -5.20 | 0.76 | 0.88 | — | 4.1 | 0.005 | 0.86 | 0.0 | 0.05 | 15.84 | 0.00 | 2.243 | 21.66 | 0.00 | 0.6 | 99.4 | 0.0 | -1.93 | 2.29 | 0.76 | 0.88 | — | 9140 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ABK | 11698 | 2024-01-17 | 2020-09-07 | 3.6 | 4.10 | 3.49 | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 16.30 | 0.00 | 2.315 | 5.67 | 1.23 | 1.5 | 98.5 | 0.0 | 0.91 | 0.28 | 0.87 | 1.10 | 3.9 | 0.003 | 0.61 | 0.0 | 0.03 | 19.21 | 0.00 | 2.250 | 5.35 | 3.70 | 2.1 | 97.9 | 0.0 | 5.10 | 1.54 | 0.28 | 0.86 | 1.35 | 1574 | 196 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKX | 14056 | 2024-01-17 | 2021-12-19 | 3.16 | 3.10 | 2.99 | 3.2 | 0.011 | 1.82 | 0.0 | 0.09 | 10.51 | 0.01 | 2.523 | 0.00 | 0.00 | 3.3 | 96.7 | 0.0 | -1.48 | 0.39 | 0.79 | 6.00 | 3.2 | 0.003 | 0.56 | 0.0 | 0.05 | 12.49 | 0.00 | 2.079 | 4.25 | 0.26 | 1.9 | 98.1 | 0.0 | -1.50 | 0.81 | 0.41 | 0.86 | 5.25 | 6822 | 438 | 6 | 0 | 0 | 0 | 3480 | logfile |
✔ | 7C99 | 30309 | 2024-01-18 | 2020-06-05 | 3.36 | 3.44 | — | 3.5 | 0.008 | 1.05 | 0.0 | 0.05 | 18.46 | 0.00 | 1.776 | 9.93 | 0.00 | 6.0 | 94.0 | 0.0 | -5.91 | 0.50 | 0.85 | 3.07 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 18.89 | 0.00 | 2.198 | 5.99 | 1.98 | 5.8 | 94.2 | 0.0 | -2.28 | 2.16 | 0.50 | 0.87 | 2.55 | 7656 | 927 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 7C9A | 30310 | 2024-01-18 | 2020-06-05 | 3.43 | 3.55 | — | 3.6 | 0.007 | 1.04 | 0.0 | 0.05 | 19.52 | 0.01 | 1.965 | 8.72 | 0.00 | 4.9 | 95.1 | 0.0 | -4.96 | 0.48 | 0.87 | 3.13 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 18.70 | 0.00 | 2.297 | 5.39 | 2.29 | 4.1 | 95.9 | 0.0 | -0.20 | 1.35 | 0.48 | 0.89 | 2.82 | 7590 | 933 | 7 | 18 | 6 | 0 | 0 | logfile |
✔ | 7C9C | 30311 | 2024-01-18 | 2020-06-05 | 3.33 | 3.44 | — | 3.4 | 0.009 | 1.03 | 0.0 | 0.06 | 19.22 | 0.00 | 1.232 | 5.18 | 0.79 | 5.4 | 94.6 | 0.0 | -5.45 | 0.54 | 0.87 | 4.39 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 18.27 | 0.01 | 2.263 | 3.97 | 2.24 | 4.4 | 95.6 | 0.0 | -1.63 | 0.60 | 0.52 | 0.90 | 3.28 | 7452 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 7PNB | 13546 | 2024-01-20 | 2021-09-06 | 3.46 | 2.29 | — | 2.2 | 0.013 | 1.75 | 18.0 | 0.12 | 19.31 | 0.03 | 1.317 | 8.70 | 2.56 | 5.5 | 94.5 | 0.0 | 0.09 | 0.77 | 0.84 | 4.32 | 2.1 | 0.004 | 0.77 | 0.0 | 0.05 | 14.07 | 0.00 | 2.145 | 8.21 | 3.99 | 4.2 | 95.8 | 0.0 | 0.28 | 0.51 | 0.74 | 0.79 | 3.99 | 15714 | 1647 | 54 | 0 | 252 | 0 | 0 | logfile |
✔ | 6UUR | 20900 | 2024-01-17 | 2019-10-31 | 3.5 | 3.51 | — | 3.6 | 0.004 | 0.76 | 0.0 | 0.05 | 15.65 | 0.00 | 2.644 | 8.15 | 0.00 | 5.3 | 94.7 | 0.0 | -4.46 | 0.56 | 0.78 | 3.10 | 3.7 | 0.007 | 0.98 | 0.0 | 0.05 | 16.85 | 0.00 | 2.164 | 13.77 | 6.80 | 11.8 | 88.2 | 0.0 | -4.62 | 2.21 | 0.52 | 0.80 | 3.03 | 2770 | 400 | 10 | 0 | 0 | 0 | 0 | logfile |