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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oi0 | 12916 | 2023-12-14 | 2021-05-11 | 2.76 | 2.96 | 2.85 | 2.8 | 0.014 | 1.08 | 0.0 | 0.06 | 23.68 | 0.01 | 1.912 | 23.66 | 0.23 | 10.2 | 89.8 | 0.0 | -2.50 | 0.80 | 0.75 | 2.74 | 2.8 | 0.003 | 0.62 | 0.0 | 0.03 | 23.08 | 0.00 | 2.031 | 15.36 | 1.28 | 7.4 | 92.6 | 0.0 | -0.68 | 0.43 | 0.83 | 0.79 | 2.07 | 29255 | 1037 | 17 | 963 | 0 | 374 | 0 | logfile |
✔ | 7E7B | 30998 | 2023-12-14 | 2021-02-25 | 2.6 | 2.79 | — | 2.7 | 0.011 | 0.95 | 3.0 | 0.07 | 14.73 | 0.02 | 2.198 | 4.93 | 5.49 | 3.6 | 96.4 | 0.0 | -2.02 | 0.83 | 0.87 | 4.58 | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 14.60 | 0.00 | 2.166 | 4.40 | 1.63 | 2.8 | 97.2 | 0.0 | -0.29 | 0.42 | 0.82 | 0.88 | 4.26 | 27363 | 3306 | 48 | 0 | 99 | 36 | 0 | logfile |
✔ | 8A64 | 15205 | 2023-12-08 | 2022-06-16 | 4.6 | 7.63 | 4.66 | 4.6 | 0.008 | 0.86 | 0.0 | 0.06 | 6.56 | 0.01 | 2.112 | 20.40 | 0.00 | 5.8 | 94.2 | 0.0 | -1.55 | 0.91 | 0.78 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 5.87 | 0.00 | 2.038 | 17.83 | 0.00 | 10.2 | 89.8 | 0.0 | -1.66 | 1.87 | 0.91 | 0.78 | — | 6737 | 1354 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7PBJ | 13293 | 2023-12-08 | 2021-08-02 | 3.4 | 3.54 | 3.40 | 3.2 | 0.018 | 2.20 | 140.0 | 0.13 | 19.50 | 0.01 | 0.650 | 29.74 | 11.71 | 2.5 | 96.9 | 0.6 | 1.69 | 0.71 | 0.67 | 2.07 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 17.42 | 0.00 | 1.896 | 14.50 | 0.24 | 3.7 | 96.3 | 0.1 | 0.78 | 2.34 | 0.89 | 0.86 | 2.01 | 59486 | 8015 | 42 | 0 | 28 | 14 | 0 | logfile |
✔ | 7B5N | 12041 | 2023-12-09 | 2020-12-05 | 3.6 | 3.39 | 3.52 | 3.7 | 0.007 | 0.79 | 0.0 | 0.05 | 15.39 | 0.00 | 1.998 | 13.46 | 0.09 | 9.3 | 90.7 | 0.0 | -1.35 | 0.78 | 0.81 | 1.56 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.97 | 0.00 | 2.131 | 9.78 | 0.18 | 5.8 | 94.2 | 0.0 | 0.18 | 0.39 | 0.76 | 0.79 | 1.12 | 9965 | 1229 | 9 | 0 | 10 | 0 | 0 | logfile |
✔ | 8EJG | 28181 | 2023-12-09 | 2022-09-16 | 3.13 | 3.83 | 3.14 | 3.5 | 0.025 | 1.94 | 3.0 | 0.17 | 11.05 | 0.01 | 2.106 | 0.88 | 0.00 | 6.4 | 93.6 | 0.0 | -1.09 | 0.86 | 0.81 | 3.20 | 3.5 | 0.004 | 0.88 | 0.0 | 0.05 | 14.56 | 0.00 | 2.217 | 11.48 | 0.21 | 9.1 | 90.7 | 0.3 | -0.86 | 1.50 | 0.86 | 0.81 | 2.74 | 9966 | 1083 | 36 | 0 | 102 | 0 | 0 | logfile |
✔ | 7EU7 | 31308 | 2023-12-12 | 2021-05-16 | 3.5 | 3.93 | — | 3.5 | 0.003 | 0.64 | 0.0 | 0.10 | 13.46 | 0.01 | 2.172 | 16.47 | 2.99 | 5.0 | 94.8 | 0.1 | -0.02 | 0.83 | 0.83 | 2.68 | 3.4 | 0.002 | 0.58 | 0.0 | 0.06 | 13.33 | 0.00 | 2.219 | 7.65 | 0.11 | 4.8 | 95.1 | 0.0 | 0.13 | 0.31 | 0.84 | 0.85 | 2.46 | 21773 | 3134 | 8 | 0 | 25 | 0 | 0 | logfile |
✔ | 7R89 | 24312 | 2023-12-09 | 2021-06-26 | 2.6 | 2.92 | — | 2.9 | 0.002 | 0.56 | 0.0 | 0.04 | 14.78 | 0.00 | 2.221 | 7.92 | 3.39 | 3.8 | 96.2 | 0.0 | -1.46 | 0.71 | 0.86 | 3.40 | 2.8 | 0.004 | 0.62 | 0.0 | 0.04 | 16.07 | 0.00 | 2.204 | 6.18 | 2.69 | 5.0 | 95.0 | 0.0 | 0.83 | 1.29 | 0.72 | 0.90 | 3.77 | 10531 | 1332 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WG7 | 32479 | 2023-12-14 | 2021-12-28 | 4.0 | 4.39 | — | 4.2 | 0.005 | 0.88 | 0.0 | 0.06 | 18.04 | 0.01 | 2.237 | 6.84 | 0.07 | 7.8 | 92.2 | 0.0 | -2.10 | 0.86 | 0.78 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.05 | 15.90 | 0.00 | 2.111 | 14.41 | 0.17 | 8.7 | 91.3 | 0.0 | -1.54 | 1.15 | 0.87 | 0.80 | — | 27041 | 3313 | 25 | 0 | 73 | 0 | 0 | logfile |
✔ | 6RiC | 4888 | 2023-12-14 | 2019-04-23 | 2.8 | 2.91 | 2.91 | 2.8 | 0.006 | 0.75 | 0.0 | 0.05 | 14.01 | 0.01 | 2.068 | 5.10 | 0.03 | 3.5 | 96.5 | 0.0 | -4.16 | 0.76 | 0.83 | 4.00 | 2.9 | 0.004 | 0.64 | 0.0 | 0.05 | 16.52 | 0.00 | 2.057 | 10.81 | 1.67 | 3.1 | 96.9 | 0.0 | -0.09 | 1.02 | 0.79 | 0.89 | 3.45 | 29677 | 3663 | 12 | 0 | 5 | 0 | 0 | logfile |
✔ | 7AoZ | 11848 | 2023-12-15 | 2020-10-15 | 2.85 | 3.19 | — | 3.0 | 0.005 | 0.65 | 0.0 | 0.05 | 12.78 | 0.00 | 2.045 | 3.00 | 2.42 | 5.8 | 94.2 | 0.0 | -0.31 | 0.87 | 0.87 | 4.19 | 3.0 | 0.002 | 0.57 | 0.0 | 0.04 | 14.83 | 0.00 | 2.056 | 6.80 | 1.85 | 5.0 | 95.0 | 0.0 | 0.43 | 1.19 | 0.87 | 0.88 | 3.44 | 31512 | 3782 | 15 | 42 | 5 | 0 | 0 | logfile |
✔ | 7V27 | 31638 | 2023-12-07 | 2021-08-07 | 4.18 | 4.43 | — | 4.2 | 0.002 | 0.54 | 0.0 | 0.04 | 11.75 | 0.00 | 2.229 | 9.54 | 0.00 | 9.2 | 90.8 | 0.0 | -4.40 | 0.85 | 0.80 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.05 | 11.77 | 0.00 | 2.205 | 18.15 | 0.00 | 10.8 | 89.2 | 0.0 | -2.52 | 0.81 | 0.86 | 0.82 | — | 3252 | 421 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DSV | 30847 | 2023-12-08 | 2021-01-03 | 3.4 | 3.02 | — | 3.2 | 0.008 | 1.06 | 2.0 | 0.06 | 13.92 | 0.01 | 2.180 | 14.28 | 1.75 | 8.4 | 91.6 | 0.0 | -1.28 | 0.61 | 0.77 | 2.46 | 3.2 | 0.005 | 0.61 | 0.0 | 0.04 | 14.97 | 0.00 | 2.318 | 8.91 | 0.50 | 5.8 | 94.2 | 0.0 | 1.01 | 1.10 | 0.61 | 0.76 | 1.69 | 9340 | 1296 | 6 | 0 | 16 | 0 | 0 | logfile |
✔ | 6TAS | 10426 | 2023-12-08 | 2019-10-30 | 2.75 | 2.69 | — | 3.8 | 0.006 | 0.87 | 4.0 | 0.06 | 14.84 | 0.01 | 2.094 | 12.58 | 0.11 | 7.7 | 92.3 | 0.0 | -1.28 | 0.53 | 0.75 | 2.28 | 2.7 | 0.002 | 0.58 | 0.0 | 0.03 | 17.99 | 0.00 | 2.213 | 5.25 | 3.06 | 3.8 | 96.2 | 0.0 | 1.04 | 0.57 | 0.58 | 0.80 | 2.21 | 8552 | 1044 | 10 | 0 | 2 | 0 | 0 | logfile |
✔ | 7KPW | 22990 | 2023-12-07 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.9 | 0.003 | 0.73 | 0.0 | 0.04 | 5.85 | 0.00 | 2.148 | 2.79 | 0.00 | 11.5 | 87.9 | 0.6 | -0.50 | 2.04 | 0.82 | 0.82 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NSC | 12564 | 2023-12-08 | 2021-03-05 | 3.3 | 3.46 | 3.32 | 3.4 | 0.005 | 0.71 | 0.0 | 0.04 | 14.50 | 0.00 | 1.732 | 9.65 | 0.10 | 8.3 | 91.7 | 0.0 | -1.46 | 0.77 | 0.81 | 2.53 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 16.15 | 0.00 | 2.076 | 7.96 | 0.31 | 5.9 | 94.1 | 0.0 | -0.21 | 0.89 | 0.76 | 0.82 | 1.32 | 9327 | 1230 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z6G | 11093 | 2023-12-11 | 2020-05-28 | 3.06 | 2.92 | — | 3.0 | 0.010 | 0.98 | 0.0 | 0.06 | 11.94 | 0.01 | 1.608 | 7.69 | 1.47 | 6.6 | 93.3 | 0.1 | -3.39 | 0.82 | 0.85 | 4.17 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.42 | 0.00 | 2.159 | 8.27 | 0.25 | 3.7 | 96.3 | 0.0 | 0.56 | 0.62 | 0.83 | 0.88 | 3.04 | 18068 | 2142 | 4 | 28 | 2 | 0 | 0 | logfile |
✔ | 6DM1 | 7961 | 2023-12-15 | 2018-06-04 | 4.2 | 4.55 | — | 4.4 | 0.013 | 1.19 | 0.0 | 0.10 | 11.07 | 0.01 | 2.171 | 4.38 | 0.60 | 8.4 | 91.2 | 0.4 | -3.78 | 0.87 | 0.79 | — | 4.4 | 0.004 | 0.67 | 0.0 | 0.04 | 11.73 | 0.00 | 2.117 | 11.91 | 0.00 | 7.4 | 92.5 | 0.1 | -0.50 | 1.08 | 0.89 | 0.83 | — | 31097 | 3941 | 8 | 0 | 5 | 0 | 0 | logfile |
✔ | 7NEQ | 12290 | 2023-12-09 | 2021-02-04 | 3.12 | 2.80 | — | 3.1 | 0.007 | 0.79 | 0.0 | 0.05 | 16.91 | 0.00 | 1.600 | 15.40 | 5.56 | 7.9 | 92.1 | 0.0 | -3.70 | 0.74 | 0.81 | 3.24 | 3.1 | 0.007 | 0.76 | 0.0 | 0.05 | 17.07 | 0.00 | 2.164 | 9.70 | 0.67 | 7.3 | 92.7 | 0.0 | -1.23 | 0.80 | 0.75 | 0.83 | 3.44 | 12529 | 1582 | 11 | 0 | 7 | 16 | 0 | logfile |
✔ | 6UUS | 20901 | 2023-12-08 | 2019-10-31 | 2.4 | 2.10 | 2.30 | 2.4 | 0.002 | 0.50 | 0.0 | 0.04 | 17.13 | 0.00 | 2.214 | 7.50 | 3.27 | 2.8 | 97.2 | 0.0 | -2.25 | 0.57 | 0.73 | 3.22 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.74 | 0.00 | 2.183 | 9.20 | 1.84 | 3.6 | 96.4 | 0.0 | 0.64 | 1.01 | 0.63 | 0.78 | 3.41 | 9308 | 1190 | 7 | 0 | 0 | 0 | 0 | logfile |