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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DV3 | 8914 | 2023-12-08 | 2018-06-22 | 4.1 | 4.29 | — | 4.3 | 0.008 | 1.19 | 0.0 | 0.06 | 12.83 | 0.01 | 1.837 | 8.62 | 5.67 | 5.2 | 94.8 | 0.0 | -4.68 | 0.63 | 0.69 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.05 | 12.62 | 0.00 | 2.023 | 10.79 | 0.02 | 3.7 | 96.3 | 0.0 | -1.65 | 0.84 | 0.63 | 0.82 | — | 57975 | 7500 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZS | 24776 | 2023-12-07 | 2021-08-27 | 2.52 | 2.32 | — | 2.1 | 0.005 | 0.46 | 0.0 | 0.03 | 14.73 | 0.00 | 2.273 | 3.04 | 0.00 | 1.0 | 99.0 | 0.0 | 1.98 | 0.77 | 0.79 | 1.82 | 2.0 | 0.003 | 0.42 | 0.0 | 0.04 | 16.16 | 0.00 | 2.327 | 4.66 | 0.35 | 0.0 | 100.0 | 0.0 | 5.95 | 1.19 | 0.79 | 0.82 | 1.19 | 2445 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JZ3 | 22529 | 2023-12-08 | 2020-09-01 | 2.56 | 2.99 | — | 3.0 | 0.003 | 0.62 | 0.0 | 0.05 | 13.64 | 0.00 | 2.211 | 10.50 | 1.09 | 5.8 | 94.2 | 0.0 | -2.54 | 0.51 | 0.62 | 2.00 | 3.0 | 0.006 | 0.88 | 0.0 | 0.05 | 16.75 | 0.00 | 2.011 | 16.84 | 5.94 | 8.6 | 91.4 | 0.0 | -2.04 | 1.63 | 0.47 | 0.65 | 1.61 | 8142 | 1038 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U46 | 26330 | 2023-12-13 | 2022-02-28 | 2.68 | 3.21 | 2.68 | 3.1 | 0.011 | 0.79 | 0.0 | 0.06 | 26.92 | 0.01 | 2.200 | 4.23 | 0.77 | 3.1 | 96.9 | 0.0 | -0.24 | 0.60 | 0.79 | 4.78 | 3.1 | 0.004 | 0.63 | 0.0 | 0.04 | 27.34 | 0.00 | 2.014 | 3.65 | 1.02 | 2.4 | 97.6 | 0.0 | 1.83 | 0.47 | 0.62 | 0.82 | 3.57 | 24375 | 925 | 11 | 290 | 0 | 0 | 11015 | logfile |
✔ | 7V6C | 31742 | 2023-12-10 | 2021-08-20 | 3.3 | 2.45 | 3.20 | 3.3 | 0.012 | 1.56 | 1.0 | 0.09 | 14.65 | 0.01 | 2.230 | 6.10 | 3.90 | 3.5 | 96.5 | 0.0 | -0.64 | 0.64 | 0.76 | 2.40 | 3.2 | 0.002 | 0.58 | 0.0 | 0.04 | 16.37 | 0.00 | 2.083 | 8.41 | 0.19 | 2.7 | 97.3 | 0.0 | 0.96 | 1.87 | 0.70 | 0.79 | 2.41 | 15643 | 1800 | 6 | 54 | 0 | 0 | 0 | logfile |
✔ | 6SD2 | 10146 | 2023-12-10 | 2019-07-26 | 3.1 | 3.07 | — | 3.1 | 0.009 | 0.88 | 0.0 | 0.05 | 16.06 | 0.00 | 2.355 | 7.23 | 5.56 | 7.3 | 92.7 | 0.0 | -4.71 | 0.68 | 0.85 | 4.01 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 17.42 | 0.00 | 2.315 | 10.42 | 0.13 | 2.4 | 97.6 | 0.0 | 1.06 | 1.07 | 0.70 | 0.87 | 3.49 | 13566 | 1848 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CZB | 30508 | 2023-12-08 | 2020-09-07 | 3.8 | 4.14 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.06 | 15.72 | 0.01 | 2.360 | 4.78 | 0.47 | 12.5 | 87.5 | 0.0 | -4.95 | 0.56 | 0.80 | 2.30 | 4.1 | 0.003 | 0.88 | 0.0 | 0.05 | 16.92 | 0.00 | 2.251 | 10.20 | 0.94 | 10.8 | 89.2 | 0.0 | -1.54 | 1.39 | 0.56 | 0.80 | 1.70 | 6304 | 776 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZV | 24779 | 2023-12-07 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.37 | 0.0 | 0.03 | 15.99 | 0.00 | 2.228 | 4.86 | 0.67 | 0.0 | 100.0 | 0.0 | 5.66 | 0.87 | 0.83 | 0.83 | 1.88 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EG0 | 28108 | 2023-12-08 | 2022-09-10 | 3.53 | 4.58 | 3.65 | 4.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.77 | 0.00 | 2.269 | 7.87 | 0.00 | 0.5 | 99.5 | 0.0 | 1.82 | 0.89 | 0.83 | 1.71 | 4.0 | 0.005 | 0.62 | 0.0 | 0.04 | 17.73 | 0.00 | 2.159 | 13.62 | 0.20 | 1.6 | 98.4 | 0.0 | 1.43 | 0.59 | 0.91 | 0.85 | 2.23 | 6031 | 584 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 7NSB | 12563 | 2023-12-10 | 2021-03-05 | 3.7 | 3.60 | 3.62 | 3.7 | 0.004 | 0.70 | 0.0 | 0.05 | 13.75 | 0.00 | 2.214 | 8.33 | 0.00 | 11.5 | 88.5 | 0.0 | -2.03 | 0.73 | 0.82 | 2.57 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 15.38 | 0.00 | 2.139 | 7.84 | 0.37 | 10.4 | 89.6 | 0.0 | -1.04 | 0.31 | 0.73 | 0.82 | 1.63 | 13474 | 1775 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U6V | 26381 | 2023-12-10 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | 6.8 | 0.002 | 0.50 | 0.0 | 0.04 | 13.94 | 0.00 | 1.958 | 15.42 | 1.75 | 6.3 | 93.7 | 0.0 | -0.57 | 0.41 | 0.82 | 0.72 | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✔ | 7JZH | 22531 | 2023-12-12 | 2020-09-02 | 3.59 | 3.46 | — | 3.5 | 0.006 | 0.96 | 4.0 | 0.06 | 20.56 | 0.01 | 2.095 | 16.68 | 16.34 | 8.7 | 91.3 | 0.0 | -3.42 | 0.56 | 0.73 | 1.23 | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 19.32 | 0.00 | 2.126 | 10.99 | 0.94 | 5.6 | 94.4 | 0.0 | -0.44 | 1.64 | 0.60 | 0.74 | 1.27 | 20328 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P7X | 20272 | 2023-12-15 | 2019-06-06 | 4.3 | 5.62 | 4.32 | 4.2 | 0.007 | 1.01 | 2.0 | 0.05 | 15.45 | 0.01 | 1.495 | 10.68 | 1.27 | 10.3 | 89.4 | 0.3 | -3.84 | 0.84 | 0.63 | — | 4.3 | 0.006 | 0.73 | 0.0 | 0.04 | 14.04 | 0.01 | 1.774 | 20.24 | 0.00 | 11.0 | 89.0 | 0.0 | -1.30 | 0.89 | 0.88 | 0.76 | — | 30537 | 1833 | 5 | 0 | 0 | 0 | 15288 | logfile |
✔ | 6PEM | 20316 | 2023-12-08 | 2019-06-20 | 3.5 | 3.59 | — | 3.5 | 0.007 | 0.93 | 1.0 | 0.06 | 13.99 | 0.01 | 2.238 | 2.98 | 0.39 | 3.5 | 96.4 | 0.0 | -5.10 | 0.82 | 0.89 | 2.08 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.86 | 0.00 | 2.154 | 5.92 | 0.37 | 3.6 | 96.4 | 0.0 | -0.21 | 1.78 | 0.82 | 0.88 | 1.75 | 108033 | 13503 | 74 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WAY | 32389 | 2023-12-09 | 2021-12-15 | 2.9 | 3.11 | — | 2.9 | 0.004 | 0.54 | 0.0 | 0.04 | 19.06 | 0.00 | 2.172 | 5.59 | 0.00 | 2.8 | 97.2 | 0.0 | 1.31 | 0.87 | 0.85 | 2.73 | 2.9 | 0.002 | 0.56 | 0.0 | 0.03 | 19.73 | 0.00 | 2.206 | 5.96 | 0.72 | 2.1 | 97.9 | 0.0 | 1.71 | 0.32 | 0.89 | 0.88 | 2.33 | 11453 | 960 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 6YS8 | 10893 | 2023-12-07 | 2020-04-21 | 3.9 | 4.00 | 3.55 | 3.9 | 0.006 | 1.03 | 1.0 | 0.08 | 15.75 | 0.02 | 1.522 | 10.61 | 1.70 | 6.4 | 91.4 | 2.2 | -3.81 | 0.65 | 0.83 | 1.77 | 3.9 | 0.004 | 0.89 | 0.0 | 0.05 | 16.96 | 0.00 | 2.102 | 16.84 | 0.85 | 4.8 | 94.1 | 1.1 | 0.66 | 0.74 | 0.65 | 0.82 | 0.63 | 5624 | 737 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZLG | 14779 | 2023-12-09 | 2022-04-15 | 2.72 | 2.42 | 2.69 | 2.6 | 0.004 | 0.71 | 0.0 | 0.05 | 13.43 | 0.00 | 2.187 | 7.18 | 0.66 | 4.4 | 95.2 | 0.4 | 0.03 | 0.69 | 0.83 | 2.76 | 2.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.14 | 0.00 | 2.023 | 7.50 | 1.04 | 5.8 | 94.0 | 0.2 | 0.48 | 0.75 | 0.67 | 0.84 | 2.86 | 9618 | 1226 | 7 | 0 | 0 | 10 | 0 | logfile |
✔ | 6P7W | 20271 | 2023-12-13 | 2019-06-06 | 4.1 | 4.34 | 4.07 | 4.1 | 0.007 | 0.94 | 0.0 | 0.05 | 15.40 | 0.01 | 1.961 | 6.90 | 0.07 | 11.1 | 88.6 | 0.3 | -3.77 | 0.84 | 0.77 | — | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.48 | 0.00 | 1.866 | 10.23 | 0.00 | 8.6 | 91.4 | 0.0 | 0.15 | 0.82 | 0.84 | 0.76 | — | 25800 | 1542 | 5 | 0 | 0 | 0 | 12936 | logfile |
✔ | 7DR6 | 30824 | 2023-12-08 | 2020-12-26 | 4.1 | 4.22 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 7.81 | 0.00 | 2.196 | 10.05 | 0.12 | 4.9 | 94.9 | 0.1 | -2.74 | 0.68 | 0.63 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 13.22 | 0.00 | 2.079 | 15.91 | 0.06 | 3.7 | 96.2 | 0.0 | 0.18 | 2.26 | 0.73 | 0.72 | — | 59957 | 7661 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LNB | 0929 | 2023-12-14 | 2019-12-28 | 3.18 | 2.72 | — | 3.0 | 0.006 | 1.07 | 1.0 | 0.06 | 14.36 | 0.01 | 2.202 | 3.97 | 0.50 | 12.1 | 87.9 | 0.0 | -5.23 | 0.70 | 0.76 | 3.53 | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 16.78 | 0.00 | 2.145 | 8.96 | 0.50 | 10.7 | 89.3 | 0.0 | -2.70 | 0.54 | 0.71 | 0.80 | 2.60 | 29583 | 3425 | 13 | 100 | 0 | 0 | 0 | logfile |