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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3KTT | 5148 | 2023-12-07 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.6 | 0.005 | 1.21 | 0.0 | 0.05 | 17.07 | 0.01 | 2.016 | 34.63 | 0.49 | 11.5 | 87.3 | 1.2 | -2.51 | 2.08 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SAK | 40272 | 2023-12-14 | 2023-04-01 | 3.0 | 2.08 | — | 1.9 | 0.004 | 0.51 | 0.0 | 0.04 | 12.22 | 0.01 | 2.167 | 4.54 | 2.03 | 2.4 | 97.6 | 0.0 | -0.27 | 0.73 | 0.76 | 4.12 | 1.6 | 0.006 | 0.73 | 1.0 | 0.05 | 15.02 | 0.00 | 1.999 | 7.81 | 3.16 | 2.7 | 97.3 | 0.0 | 0.11 | 1.04 | 0.75 | 0.78 | 3.55 | 28522 | 3598 | 24 | 0 | 56 | 0 | 0 | logfile |
✔ | 8oM9 | 16971 | 2023-12-10 | 2023-03-31 | 3.32 | 2.45 | 3.31 | 2.0 | 0.008 | 1.29 | 3.0 | 0.09 | 18.88 | 0.00 | 2.025 | 25.29 | 2.76 | 6.3 | 93.7 | 0.0 | -1.44 | 0.71 | 0.73 | 0.58 | 1.6 | 0.004 | 0.74 | 0.0 | 0.04 | 19.07 | 0.00 | 1.800 | 20.89 | 0.73 | 5.5 | 94.5 | 0.1 | -0.91 | 0.52 | 0.68 | 0.66 | 0.73 | 13314 | 1548 | 6 | 44 | 4 | 0 | 0 | logfile |
✔ | 8CAM | 16530 | 2023-12-14 | 2023-01-24 | 1.86 | 1.57 | 1.83 | 1.7 | 0.010 | 1.53 | 0.0 | 0.11 | 21.86 | 0.03 | 1.821 | 0.54 | 0.27 | 3.0 | 96.8 | 0.1 | -1.28 | 0.64 | 0.76 | 6.57 | 1.6 | 0.006 | 0.97 | 0.0 | 0.05 | 22.27 | 0.01 | 1.747 | 7.43 | 1.24 | 2.5 | 97.5 | 0.0 | -0.04 | 0.34 | 0.73 | 0.82 | 6.46 | 86648 | 2767 | 65 | 2724 | 322 | 6113 | 0 | logfile |
✔ | 8oMA | 16972 | 2023-12-09 | 2023-03-31 | 3.29 | 2.61 | 3.29 | 3.2 | 0.008 | 1.30 | 1.0 | 0.09 | 19.92 | 0.01 | 1.878 | 28.14 | 2.97 | 7.9 | 92.1 | 0.0 | -1.51 | 0.68 | 0.70 | 0.46 | 1.6 | 0.004 | 0.81 | 0.0 | 0.05 | 20.18 | 0.00 | 1.915 | 24.91 | 0.42 | 6.7 | 93.3 | 0.0 | -0.53 | 1.95 | 0.64 | 0.60 | 0.36 | 11379 | 1337 | 6 | 34 | 3 | 0 | 0 | logfile |
✔ | 7UTZ | 26795 | 2023-12-13 | 2022-04-28 | 2.4 | 2.07 | — | 2.4 | 0.004 | 0.69 | 0.0 | 0.04 | 12.46 | 0.01 | 2.137 | 3.96 | 0.08 | 3.0 | 97.0 | 0.0 | -0.05 | 0.66 | 0.68 | 3.51 | 1.6 | 0.003 | 0.58 | 0.0 | 0.04 | 15.13 | 0.00 | 1.899 | 9.34 | 2.18 | 4.0 | 96.0 | 0.0 | -0.15 | 0.77 | 0.72 | 0.76 | 3.36 | 23679 | 1536 | 10 | 0 | 8 | 0 | 11632 | logfile |
✔ | 8EN7 | 28269 | 2023-12-12 | 2022-09-28 | 1.68 | 1.48 | 1.71 | 1.6 | 0.012 | 1.29 | 0.0 | 0.07 | 15.67 | 0.01 | 0.731 | 8.76 | 1.27 | 1.2 | 98.8 | 0.0 | 2.40 | 0.61 | 0.75 | 8.54 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.30 | 0.00 | 2.237 | 5.11 | 0.03 | 1.2 | 98.8 | 0.0 | 5.33 | 0.46 | 0.75 | 0.85 | 7.99 | 37614 | 4128 | 54 | 0 | 6 | 2544 | 0 | logfile |
✔ | 8EMQ | 28259 | 2023-12-12 | 2022-09-28 | 1.66 | 1.59 | 1.68 | 1.6 | 0.011 | 1.31 | 0.0 | 0.07 | 15.25 | 0.01 | 0.733 | 5.98 | 1.91 | 0.6 | 99.4 | 0.0 | 2.37 | 0.66 | 0.78 | 9.05 | 1.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.53 | 0.00 | 2.078 | 3.66 | 0.64 | 1.2 | 98.8 | 0.0 | 5.31 | 2.13 | 0.81 | 0.89 | 8.89 | 37805 | 4128 | 72 | 0 | 30 | 2975 | 0 | logfile |
✔ | 7KBB | 22788 | 2023-12-08 | 2020-10-01 | 4.02 | 2.37 | 4.07 | 2.0 | 0.006 | 1.16 | 0.0 | 0.06 | 14.88 | 0.01 | 2.073 | 14.81 | 1.58 | 5.4 | 94.1 | 0.5 | -1.59 | 0.57 | 0.58 | — | 1.6 | 0.003 | 0.72 | 0.0 | 0.04 | 14.59 | 0.01 | 2.110 | 14.66 | 0.00 | 6.7 | 93.3 | 0.0 | -0.71 | 0.66 | 0.58 | 0.60 | — | 6422 | 812 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oUG | 13076 | 2023-12-10 | 2021-06-11 | 3.1 | 2.33 | 3.12 | 1.7 | 0.004 | 0.74 | 0.0 | 0.04 | 17.65 | 0.01 | 1.769 | 5.66 | 0.14 | 2.4 | 97.6 | 0.0 | 0.28 | 0.78 | 0.75 | 2.41 | 1.6 | 0.003 | 0.68 | 0.0 | 0.04 | 19.50 | 0.00 | 1.931 | 9.72 | 0.76 | 2.2 | 97.8 | 0.0 | 0.00 | 0.62 | 0.78 | 0.79 | 2.30 | 15090 | 1664 | 16 | 80 | 10 | 8 | 0 | logfile |
✔ | 7oUF | 13075 | 2023-12-10 | 2021-06-11 | 3.0 | 2.26 | 3.10 | 1.7 | 0.005 | 0.56 | 0.0 | 0.04 | 17.51 | 0.00 | 1.686 | 6.25 | 0.14 | 1.8 | 98.2 | 0.0 | 0.10 | 0.78 | 0.75 | 3.06 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 19.92 | 0.01 | 1.895 | 10.62 | 2.34 | 2.5 | 97.5 | 0.0 | 0.04 | 1.74 | 0.79 | 0.80 | 2.70 | 15094 | 1664 | 16 | 80 | 10 | 12 | 0 | logfile |
✔ | 8BPA | 16147 | 2023-12-09 | 2022-11-16 | 3.7 | 2.50 | 3.80 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 18.50 | 0.01 | 2.127 | 18.60 | 0.97 | 4.0 | 96.0 | 0.0 | 0.00 | 0.69 | 0.65 | 0.97 | 1.6 | 0.003 | 0.80 | 0.0 | 0.04 | 18.78 | 0.01 | 2.140 | 16.42 | 0.53 | 4.4 | 95.6 | 0.0 | 0.14 | 1.61 | 0.69 | 0.66 | 1.15 | 10393 | 1280 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 8SPo | 40680 | 2023-12-15 | 2023-05-03 | 2.98 | 2.34 | 3.17 | 2.1 | 0.004 | 0.60 | 0.0 | 0.26 | 18.57 | 0.00 | 0.334 | 11.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 0.46 | 0.30 | 0.19 | 1.6 | 0.003 | 0.72 | 0.0 | 0.04 | 18.63 | 0.00 | 1.820 | 12.08 | 1.50 | 5.8 | 94.2 | 0.0 | -1.35 | 2.06 | 0.57 | 0.48 | 1.11 | 31307 | 3428 | 22 | 154 | 6 | 0 | 0 | logfile |
✔ | 7L1Q | 23115 | 2023-12-13 | 2020-12-15 | 3.4 | 2.29 | — | 2.0 | 0.008 | 1.29 | 6.0 | 0.07 | 15.53 | 0.01 | 1.807 | 2.68 | 2.54 | 3.7 | 96.1 | 0.2 | -0.80 | 0.72 | 0.67 | 1.56 | 1.6 | 0.005 | 0.83 | 0.0 | 0.05 | 18.07 | 0.01 | 1.744 | 17.88 | 1.13 | 5.5 | 94.5 | 0.0 | -0.43 | 2.80 | 0.73 | 0.74 | 1.42 | 24204 | 3118 | 13 | 0 | 13 | 0 | 0 | logfile |
✔ | 7M4W | 23668 | 2023-12-14 | 2021-03-22 | 2.55 | 1.74 | — | 1.6 | 0.006 | 0.55 | 0.0 | 0.03 | 22.06 | 0.01 | 1.760 | 3.08 | 0.02 | 2.8 | 97.0 | 0.2 | 1.38 | 0.77 | 0.74 | 3.81 | 1.6 | 0.005 | 0.75 | 0.0 | 0.04 | 22.25 | 0.01 | 1.693 | 4.96 | 2.23 | 3.1 | 96.8 | 0.1 | 0.49 | 0.90 | 0.80 | 0.77 | 3.64 | 137923 | 5518 | 76 | 4373 | 195 | 797 | 0 | logfile |
✔ | 7M4X | 23669 | 2023-12-15 | 2021-03-22 | 2.66 | 1.75 | — | 1.6 | 0.006 | 0.56 | 0.0 | 0.03 | 22.14 | 0.01 | 1.789 | 3.62 | 0.00 | 2.5 | 97.4 | 0.1 | 1.32 | 0.77 | 0.73 | 3.46 | 1.6 | 0.007 | 0.84 | 0.0 | 0.05 | 22.35 | 0.01 | 1.626 | 5.39 | 2.60 | 3.6 | 96.3 | 0.1 | 0.21 | 0.35 | 0.80 | 0.76 | 3.33 | 139446 | 5528 | 73 | 4453 | 194 | 552 | 0 | logfile |
✔ | 7S8L | 24896 | 2023-12-08 | 2021-09-18 | 2.45 | 2.08 | 2.46 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 12.22 | 0.00 | 2.238 | 2.45 | 0.00 | 3.5 | 96.5 | 0.0 | 1.27 | 0.81 | 0.80 | 4.28 | 1.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.52 | 0.00 | 2.231 | 3.14 | 1.70 | 3.2 | 96.8 | 0.0 | 1.39 | 0.34 | 0.84 | 0.84 | 3.79 | 8177 | 1096 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7USM | 26739 | 2023-12-09 | 2022-04-25 | 2.7 | 2.25 | — | 1.5 | 0.003 | 0.63 | 0.0 | 0.04 | 12.83 | 0.01 | 2.109 | 6.35 | 0.00 | 3.9 | 96.1 | 0.0 | -0.89 | 0.72 | 0.68 | 2.45 | 1.6 | 0.004 | 0.73 | 0.0 | 0.05 | 16.19 | 0.00 | 2.098 | 10.32 | 1.98 | 4.3 | 95.7 | 0.0 | -0.65 | 0.47 | 0.74 | 0.72 | 2.28 | 11893 | 1521 | 5 | 0 | 15 | 0 | 0 | logfile |
✔ | 7RYF | 24738 | 2023-12-14 | 2021-08-25 | 2.65 | 2.01 | — | 2.3 | 0.006 | 0.61 | 0.0 | 0.07 | 22.00 | 0.02 | 1.764 | 4.27 | 0.02 | 2.5 | 97.4 | 0.1 | 1.04 | 0.76 | 0.73 | 2.78 | 1.6 | 0.008 | 0.93 | 0.0 | 0.05 | 22.33 | 0.01 | 1.716 | 7.15 | 3.00 | 3.5 | 96.4 | 0.1 | -0.22 | 0.37 | 0.79 | 0.77 | 2.75 | 137516 | 5497 | 55 | 4408 | 8 | 0 | 0 | logfile |
✔ | 7P13 | 13154 | 2023-12-10 | 2021-07-01 | 2.29 | 1.96 | 2.28 | 1.7 | 0.016 | 1.06 | 0.0 | 0.07 | 14.07 | 0.01 | 2.430 | 5.24 | 0.00 | 3.3 | 96.7 | 0.0 | 2.06 | 0.82 | 0.87 | 4.22 | 1.6 | 0.003 | 0.48 | 0.0 | 0.03 | 17.15 | 0.00 | 2.107 | 14.88 | 1.30 | 2.7 | 97.3 | 0.0 | 5.19 | 0.52 | 0.83 | 0.87 | 3.65 | 13727 | 1743 | 7 | 0 | 0 | 0 | 154 | logfile |