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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NXD | 12637 | 2023-12-10 | 2021-03-18 | 4.6 | 8.22 | 6.02 | 6.0 | 0.013 | 1.51 | 0.0 | 0.11 | 9.83 | 0.03 | 1.831 | 64.77 | 1.03 | 4.0 | 96.0 | 0.1 | -1.02 | 0.80 | 0.44 | — | 6.0 | 0.003 | 0.77 | 0.0 | 0.05 | 11.15 | 0.00 | 1.919 | 22.90 | 0.07 | 6.0 | 94.0 | 0.0 | -0.78 | 1.18 | 0.89 | 0.73 | — | 12805 | 1595 | 18 | 0 | 48 | 0 | 0 | logfile |
✔ | 7A97 | 11687 | 2023-12-16 | 2020-09-01 | 4.4 | 5.14 | 4.59 | 4.5 | 0.002 | 0.48 | 1.0 | 0.04 | 5.51 | 0.00 | 2.074 | 4.87 | 0.26 | 10.3 | 89.7 | 0.0 | -4.43 | 0.88 | 0.78 | — | 4.5 | 0.006 | 0.78 | 0.0 | 0.04 | 9.24 | 0.00 | 2.040 | 16.92 | 0.00 | 5.8 | 94.2 | 0.0 | -1.11 | 2.57 | 0.90 | 0.84 | — | 34626 | 4373 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JBQ | 9792 | 2023-12-14 | 2019-01-26 | 4.02 | 4.10 | 3.96 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 16.53 | 0.01 | 2.197 | 4.02 | 0.39 | 3.9 | 96.1 | 0.0 | -4.13 | 0.77 | 0.79 | — | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.90 | 0.00 | 2.166 | 9.05 | 0.00 | 4.6 | 95.4 | 0.0 | -0.62 | 1.60 | 0.80 | 0.82 | — | 28163 | 3347 | 10 | 101 | 3 | 0 | 0 | logfile |
✔ | 7PBU | 13303 | 2023-12-11 | 2021-08-02 | 3.3 | 2.68 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.05 | 16.55 | 0.01 | 2.364 | 1.82 | 0.00 | 1.1 | 98.9 | 0.0 | 0.22 | 0.60 | 0.76 | 2.90 | 3.3 | 0.004 | 0.61 | 0.0 | 0.04 | 20.42 | 0.00 | 2.108 | 5.82 | 0.23 | 1.3 | 98.7 | 0.0 | 0.47 | 1.85 | 0.61 | 0.79 | 1.61 | 19243 | 1063 | 12 | 68 | 0 | 0 | 9507 | logfile |
✔ | 6Si7 | 10206 | 2023-12-11 | 2019-08-08 | 3.4 | 3.48 | — | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 14.71 | 0.01 | 2.267 | 12.97 | 0.00 | 9.2 | 90.8 | 0.0 | -4.55 | 0.71 | 0.77 | 1.03 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.58 | 0.00 | 2.167 | 19.77 | 0.42 | 7.0 | 93.0 | 0.0 | -1.31 | 0.60 | 0.75 | 0.82 | 1.19 | 19476 | 2502 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KoX | 22983 | 2023-12-15 | 2020-11-10 | 2.7 | 3.29 | 2.69 | 3.1 | 0.013 | 1.19 | 0.0 | 0.23 | 13.51 | 0.01 | 2.136 | 5.49 | 0.57 | 3.6 | 96.4 | 0.0 | -0.69 | 0.69 | 0.81 | 4.07 | 3.1 | 0.004 | 0.77 | 0.0 | 0.18 | 14.31 | 0.00 | 2.187 | 7.23 | 1.15 | 2.9 | 97.1 | 0.0 | 0.90 | 0.99 | 0.68 | 0.81 | 4.57 | 31350 | 1930 | 20 | 0 | 30 | 5 | 15410 | logfile |
✔ | 6PV7 | 20487 | 2023-12-12 | 2019-07-19 | 3.34 | 3.54 | 3.37 | 3.5 | 0.007 | 1.12 | 0.0 | 0.07 | 10.90 | 0.01 | 1.952 | 5.21 | 0.64 | 5.0 | 95.0 | 0.0 | -2.91 | 0.75 | 0.83 | 3.22 | 3.5 | 0.002 | 0.61 | 0.0 | 0.04 | 14.20 | 0.00 | 2.247 | 6.75 | 0.46 | 2.6 | 97.4 | 0.0 | 0.56 | 1.26 | 0.74 | 0.85 | 2.63 | 20048 | 2379 | 28 | 0 | 58 | 8 | 0 | logfile |
✔ | 7A2G | 11624 | 2023-12-10 | 2020-08-17 | 4.1 | 6.36 | 4.20 | 6.0 | 0.006 | 0.86 | 0.0 | 0.04 | 15.22 | 0.01 | 1.869 | 47.63 | 0.49 | 16.3 | 83.4 | 0.2 | -5.55 | 0.86 | 0.78 | — | 6.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.37 | 0.00 | 1.983 | 32.62 | 0.00 | 11.8 | 88.2 | 0.0 | -2.12 | 0.72 | 0.86 | 0.80 | — | 13408 | 1680 | 12 | 0 | 4 | 4 | 0 | logfile |
✔ | 6V05 | 20969 | 2023-12-10 | 2019-11-18 | 4.1 | 4.20 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.05 | 13.87 | 0.00 | 2.054 | 9.26 | 0.75 | 3.6 | 96.3 | 0.1 | -2.86 | 0.70 | 0.79 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.33 | 0.00 | 2.158 | 9.57 | 0.00 | 5.1 | 94.9 | 0.0 | -0.46 | 1.08 | 0.70 | 0.77 | — | 13705 | 1884 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KY6 | 23069 | 2023-12-09 | 2020-12-07 | 3.1 | 3.28 | — | 3.2 | 0.006 | 0.70 | 0.0 | 0.05 | 17.44 | 0.00 | 2.092 | 12.79 | 7.34 | 6.9 | 92.9 | 0.2 | -2.79 | 0.69 | 0.85 | 2.99 | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 17.28 | 0.00 | 2.041 | 9.32 | 0.09 | 5.8 | 94.2 | 0.0 | -0.08 | 0.36 | 0.67 | 0.86 | 2.69 | 10729 | 1322 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 7Z9R | 14576 | 2023-12-14 | 2022-03-21 | 4.2 | 3.82 | 4.08 | 4.0 | 0.008 | 1.40 | 15.0 | 0.10 | 14.18 | 0.02 | 1.182 | 6.11 | 1.21 | 3.3 | 96.6 | 0.0 | -1.16 | 0.71 | 0.73 | — | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 12.25 | 0.00 | 2.140 | 7.35 | 0.10 | 2.6 | 97.4 | 0.0 | 0.32 | 0.84 | 0.76 | 0.79 | — | 27078 | 3349 | 29 | 0 | 66 | 0 | 0 | logfile |
✔ | 5SZS | 8331 | 2023-12-15 | 2016-08-15 | 3.4 | 3.57 | — | 3.5 | 0.024 | 3.04 | 3.0 | 0.20 | 13.07 | 0.01 | 1.476 | 3.47 | 0.68 | 5.7 | 93.7 | 0.6 | -0.27 | 0.85 | 0.83 | 2.56 | 3.5 | 0.004 | 0.71 | 0.0 | 0.05 | 12.86 | 0.00 | 2.084 | 6.04 | 0.52 | 5.3 | 94.5 | 0.3 | -0.05 | 0.72 | 0.85 | 0.86 | 2.61 | 30306 | 3531 | 69 | 0 | 222 | 0 | 0 | logfile |
✔ | 7V4B | 31706 | 2023-12-07 | 2021-08-12 | 3.1 | 3.04 | — | 3.1 | 0.006 | 0.60 | 0.0 | 0.05 | 14.55 | 0.00 | 2.375 | 15.32 | 0.00 | 13.2 | 86.8 | 0.0 | -5.99 | 0.41 | 0.69 | 2.66 | 3.2 | 0.004 | 0.58 | 0.0 | 0.05 | 17.12 | 0.00 | 2.167 | 8.61 | 0.89 | 12.3 | 87.7 | 0.0 | -4.88 | 0.56 | 0.41 | 0.68 | 2.15 | 3336 | 480 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PV8 | 20488 | 2023-12-12 | 2019-07-19 | 3.87 | 4.04 | 3.94 | 4.0 | 0.006 | 1.07 | 1.0 | 0.07 | 11.24 | 0.01 | 2.057 | 5.07 | 0.69 | 4.9 | 95.1 | 0.0 | -2.83 | 0.70 | 0.79 | 2.52 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 14.67 | 0.00 | 2.171 | 8.59 | 0.64 | 4.5 | 95.5 | 0.0 | 0.00 | 1.13 | 0.72 | 0.82 | 2.09 | 20051 | 2379 | 28 | 0 | 57 | 8 | 0 | logfile |
✔ | 5WC3 | 8795 | 2023-12-10 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | 3.5 | 0.003 | 0.65 | 0.0 | 0.05 | 11.90 | 0.00 | 2.189 | 6.00 | 0.21 | 9.2 | 89.8 | 1.0 | -1.88 | 1.58 | 0.77 | 0.73 | 1.44 | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✔ | 8DMF | 27535 | 2023-12-07 | 2022-07-08 | 4.0 | 4.71 | 3.73 | 4.1 | 0.003 | 0.64 | 0.0 | 0.05 | 14.28 | 0.00 | 1.977 | 13.96 | 0.00 | 5.0 | 95.0 | 0.0 | -0.20 | 0.81 | 0.83 | — | 4.1 | 0.006 | 0.81 | 0.0 | 0.05 | 15.98 | 0.00 | 1.789 | 24.74 | 0.16 | 7.0 | 93.0 | 0.0 | -0.76 | 1.16 | 0.82 | 0.84 | — | 5670 | 718 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UN8 | 26616 | 2023-12-10 | 2022-04-09 | 3.3 | 3.12 | 3.18 | 3.3 | 0.014 | 0.99 | 1.0 | 0.11 | 15.82 | 0.01 | 1.944 | 13.55 | 0.06 | 6.3 | 93.5 | 0.2 | -1.88 | 0.69 | 0.80 | 1.68 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 17.27 | 0.00 | 2.175 | 13.44 | 0.38 | 3.9 | 96.1 | 0.0 | 0.03 | 0.58 | 0.71 | 0.84 | 2.22 | 14067 | 1780 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 6X40 | 22038 | 2023-12-11 | 2020-05-21 | 2.86 | 3.10 | 2.91 | 3.0 | 0.008 | 1.12 | 3.0 | 0.13 | 12.69 | 0.01 | 2.233 | 7.24 | 0.42 | 4.2 | 95.8 | 0.0 | -2.03 | 0.71 | 0.86 | 4.16 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 15.94 | 0.00 | 2.145 | 11.03 | 3.72 | 3.7 | 96.3 | 0.0 | -0.01 | 1.28 | 0.69 | 0.88 | 3.78 | 17411 | 2121 | 17 | 0 | 26 | 0 | 0 | logfile |
✔ | 6QLD | 4579 | 2023-12-14 | 2019-01-31 | 4.15 | 4.29 | — | 4.1 | 0.004 | 0.86 | 1.0 | 0.05 | 21.70 | 0.01 | 2.289 | 5.03 | 0.25 | 5.1 | 94.8 | 0.2 | -3.52 | 0.83 | 0.76 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 21.24 | 0.00 | 2.095 | 12.35 | 0.08 | 5.4 | 94.6 | 0.0 | 1.14 | 0.74 | 0.83 | 0.76 | — | 29086 | 3157 | 22 | 248 | 0 | 0 | 0 | logfile |
✔ | 7VHN | 32000 | 2023-12-13 | 2021-09-22 | 3.8 | 3.96 | — | 3.8 | 0.006 | 0.85 | 1.0 | 0.06 | 13.37 | 0.02 | 1.473 | 11.70 | 0.72 | 7.7 | 92.2 | 0.1 | -2.94 | 0.85 | 0.83 | 2.37 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 14.83 | 0.00 | 2.142 | 8.93 | 0.50 | 5.6 | 94.4 | 0.0 | -1.46 | 0.44 | 0.85 | 0.84 | 1.87 | 25403 | 3192 | 6 | 0 | 31 | 0 | 0 | logfile |