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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QEW | 13943 | 2023-12-09 | 2021-12-03 | 2.1 | 2.62 | — | 2.2 | 0.005 | 0.86 | 0.0 | 0.03 | 11.15 | 0.00 | 2.191 | 3.73 | 2.18 | 3.3 | 96.7 | 0.0 | 1.32 | 0.78 | 0.89 | 4.62 | 2.3 | 0.003 | 0.66 | 0.0 | 0.04 | 14.43 | 0.00 | 2.188 | 5.93 | 1.19 | 3.0 | 97.0 | 0.0 | 2.91 | 1.06 | 0.79 | 0.92 | 3.35 | 9702 | 1128 | 18 | 0 | 30 | 234 | 0 | logfile |
✔ | 7TNN | 26015 | 2023-12-11 | 2022-01-21 | 3.91 | 3.40 | — | 3.6 | 0.005 | 0.92 | 0.0 | 0.06 | 11.69 | 0.01 | 2.257 | 4.06 | 0.34 | 2.8 | 97.1 | 0.1 | -2.09 | 0.71 | 0.78 | 2.40 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 15.65 | 0.00 | 2.089 | 11.06 | 0.48 | 4.1 | 95.9 | 0.0 | 0.58 | 1.19 | 0.72 | 0.80 | 1.98 | 19439 | 2486 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RKS | 4909 | 2023-12-09 | 2019-04-30 | 4.0 | 4.16 | — | 4.1 | 0.020 | 1.94 | 0.0 | 0.16 | 15.71 | 0.01 | 2.272 | 5.27 | 0.00 | 8.4 | 91.6 | 0.0 | -2.91 | 0.81 | 0.85 | — | 4.1 | 0.005 | 1.53 | 0.0 | 0.04 | 17.56 | 0.00 | 2.053 | 7.54 | 0.17 | 4.8 | 95.2 | 0.0 | 0.40 | 0.77 | 0.82 | 0.85 | — | 12572 | 1416 | 9 | 64 | 1 | 0 | 0 | logfile |
✔ | 8ANE | 15540 | 2023-12-16 | 2022-08-05 | 3.2 | 2.95 | 3.14 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 16.91 | 0.01 | 2.198 | 3.35 | 0.93 | 4.6 | 95.4 | 0.0 | -1.93 | 0.55 | 0.43 | 0.13 | 3.1 | 0.006 | 0.87 | 0.0 | 0.05 | 19.06 | 0.01 | 1.743 | 16.28 | 0.44 | 9.0 | 90.9 | 0.0 | -2.30 | 2.71 | 0.66 | 0.65 | 1.27 | 36740 | 2212 | 8 | 66 | 0 | 0 | 18195 | logfile |
✔ | 7NB6 | 12256 | 2023-12-10 | 2021-01-25 | 3.3 | 3.83 | 3.22 | 3.7 | 0.010 | 0.96 | 0.0 | 0.05 | 13.57 | 0.01 | 2.261 | 13.67 | 0.49 | 8.3 | 91.7 | 0.0 | 0.79 | 0.66 | 0.83 | 1.60 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 15.76 | 0.01 | 2.201 | 8.67 | 0.21 | 6.2 | 93.8 | 0.0 | 2.28 | 1.07 | 0.68 | 0.86 | 1.55 | 13020 | 1700 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKK | 12442 | 2023-12-11 | 2021-02-18 | 3.6 | 3.81 | — | 3.5 | 0.003 | 0.51 | 0.0 | 0.04 | 13.87 | 0.00 | 2.157 | 11.16 | 0.00 | 3.3 | 96.7 | 0.0 | 1.95 | 0.75 | 0.80 | 1.78 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 15.07 | 0.00 | 2.030 | 12.00 | 0.00 | 2.0 | 98.0 | 0.0 | 3.48 | 0.91 | 0.75 | 0.80 | 1.85 | 16671 | 1143 | 12 | 0 | 0 | 0 | 8376 | logfile |
✔ | 7E1Y | 30946 | 2023-12-16 | 2021-02-04 | 2.9 | 2.57 | 2.93 | 2.8 | 0.004 | 0.76 | 0.0 | 0.05 | 13.00 | 0.01 | 2.195 | 9.94 | 0.03 | 3.6 | 96.4 | 0.0 | -2.20 | 0.72 | 0.80 | 3.52 | 2.8 | 0.003 | 0.60 | 0.0 | 0.05 | 16.43 | 0.00 | 2.180 | 8.39 | 1.39 | 3.1 | 96.9 | 0.0 | -0.16 | 0.63 | 0.74 | 0.83 | 3.10 | 35743 | 4304 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UXV | 20933 | 2023-12-11 | 2019-11-08 | 4.7 | 4.98 | — | 4.7 | 0.006 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 1.532 | 29.48 | 0.48 | 17.7 | 82.1 | 0.3 | -5.06 | 0.80 | 0.81 | — | 4.7 | 0.003 | 0.77 | 0.0 | 0.04 | 14.49 | 0.00 | 2.098 | 16.85 | 0.06 | 11.6 | 88.2 | 0.1 | -1.00 | 0.73 | 0.79 | 0.79 | — | 16649 | 1920 | 15 | 0 | 273 | 0 | 0 | logfile |
✔ | 6VUM | 21390 | 2023-12-10 | 2020-02-16 | 3.67 | 3.90 | — | 3.9 | 0.044 | 1.77 | 0.0 | 0.06 | 15.60 | 0.00 | 1.659 | 7.99 | 1.12 | 10.7 | 89.3 | 0.0 | -3.29 | 0.57 | 0.78 | 2.43 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 16.65 | 0.00 | 2.132 | 10.92 | 0.42 | 9.8 | 90.1 | 0.1 | -0.60 | 1.04 | 0.69 | 0.86 | 1.52 | 14388 | 1636 | 8 | 0 | 22 | 0 | 0 | logfile |
✔ | 7QiA | 13985 | 2023-12-07 | 2021-12-14 | 3.5 | 3.73 | 3.29 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 12.91 | 0.00 | 2.259 | 11.63 | 0.00 | 7.9 | 92.1 | 0.0 | -1.03 | 0.65 | 0.80 | 1.56 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 14.55 | 0.00 | 2.212 | 12.04 | 0.40 | 7.7 | 92.3 | 0.0 | -0.31 | 0.28 | 0.62 | 0.80 | 1.49 | 4843 | 639 | 4 | 0 | 0 | 3 | 0 | logfile |
✔ | 7AHQ | 11790 | 2023-12-10 | 2020-09-25 | 3.6 | 4.20 | 3.44 | 3.7 | 0.056 | 2.75 | 0.0 | 0.25 | 18.22 | 0.01 | 1.918 | 7.77 | 0.00 | 2.5 | 97.5 | 0.0 | -2.65 | 0.77 | 0.82 | 2.92 | 3.7 | 0.006 | 1.07 | 0.0 | 0.05 | 18.55 | 0.00 | 1.960 | 13.20 | 0.13 | 2.8 | 97.2 | 0.0 | 0.42 | 0.93 | 0.78 | 0.87 | 2.68 | 15055 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 7X94 | 33066 | 2023-12-08 | 2022-03-15 | 4.0 | 5.15 | 4.05 | 4.4 | 0.003 | 0.62 | 0.0 | 0.05 | 13.64 | 0.00 | 2.194 | 12.77 | 0.00 | 11.0 | 89.0 | 0.0 | -2.27 | 0.78 | 0.65 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 13.91 | 0.00 | 1.955 | 19.83 | 0.00 | 10.0 | 90.0 | 0.0 | -2.07 | 0.89 | 0.81 | 0.77 | — | 6617 | 434 | 4 | 0 | 3 | 0 | 3208 | logfile |
✔ | 7X8W | 33059 | 2023-12-08 | 2022-03-15 | 3.1 | 3.76 | 3.14 | 3.6 | 0.004 | 0.60 | 0.0 | 0.05 | 14.52 | 0.00 | 2.257 | 4.44 | 0.00 | 5.8 | 94.2 | 0.0 | -1.35 | 0.73 | 0.85 | 4.31 | 3.6 | 0.002 | 0.49 | 0.0 | 0.04 | 15.57 | 0.00 | 2.157 | 5.62 | 0.27 | 4.4 | 95.6 | 0.0 | -1.10 | 0.90 | 0.70 | 0.82 | 4.32 | 6674 | 435 | 5 | 0 | 8 | 0 | 3214 | logfile |
✔ | 6WW7 | 21929 | 2023-12-11 | 2020-05-08 | 3.4 | 3.55 | 3.33 | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 15.89 | 0.00 | 2.145 | 6.99 | 2.92 | 2.9 | 97.1 | 0.0 | -2.34 | 0.76 | 0.84 | 2.50 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.36 | 0.00 | 2.023 | 9.23 | 0.28 | 3.7 | 96.3 | 0.0 | -0.16 | 0.57 | 0.80 | 0.87 | 2.50 | 16576 | 2060 | 13 | 0 | 20 | 0 | 0 | logfile |
✔ | 8B40 | 15835 | 2023-12-09 | 2022-09-19 | 4.6 | 4.13 | 4.51 | 3.6 | 0.002 | 0.50 | 0.0 | 0.04 | 10.45 | 0.00 | 2.149 | 11.85 | 4.31 | 4.2 | 95.7 | 0.0 | -0.38 | 0.77 | 0.69 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 10.91 | 0.00 | 2.129 | 15.12 | 0.00 | 5.6 | 94.4 | 0.0 | -0.80 | 1.02 | 0.76 | 0.66 | — | 39466 | 4844 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M20 | 23627 | 2023-12-08 | 2021-03-15 | 3.84 | 4.44 | — | 4.4 | 0.009 | 1.56 | 0.0 | 0.07 | 20.41 | 0.01 | 2.148 | 30.79 | 2.84 | 11.1 | 88.6 | 0.3 | -2.43 | 0.74 | 0.72 | 0.65 | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 19.74 | 0.00 | 2.103 | 17.82 | 0.49 | 6.5 | 93.5 | 0.0 | -1.46 | 0.63 | 0.74 | 0.72 | 0.46 | 60705 | 7785 | 36 | 9 | 18 | 0 | 0 | logfile |
✔ | 6ZGL | 11210 | 2023-12-10 | 2020-06-19 | 1.9 | 1.87 | — | 1.9 | 0.013 | 1.55 | 0.0 | 0.12 | 15.52 | 0.01 | 2.196 | 9.00 | 3.73 | 1.1 | 98.9 | 0.0 | 0.13 | 0.73 | 0.83 | 7.03 | 1.9 | 0.003 | 0.52 | 0.0 | 0.04 | 15.83 | 0.00 | 2.114 | 4.28 | 0.93 | 0.9 | 99.1 | 0.0 | 3.77 | 0.76 | 0.75 | 0.83 | 7.09 | 15760 | 1848 | 24 | 0 | 0 | 964 | 0 | logfile |
✔ | 7QiC | 13987 | 2023-12-07 | 2021-12-14 | 4.1 | 4.27 | 4.00 | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 12.83 | 0.00 | 2.221 | 13.06 | 0.20 | 7.7 | 92.3 | 0.0 | -0.78 | 0.64 | 0.79 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 12.66 | 0.00 | 2.178 | 12.24 | 0.20 | 8.2 | 91.8 | 0.0 | -0.05 | 1.36 | 0.64 | 0.79 | — | 4841 | 639 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 5WEK | 8819 | 2023-12-14 | 2017-07-10 | 4.6 | 4.81 | — | 4.6 | 0.006 | 0.93 | 0.0 | 0.05 | 9.28 | 0.01 | 2.248 | 6.20 | 0.27 | 4.8 | 94.9 | 0.2 | -4.07 | 0.74 | 0.76 | — | 4.6 | 0.003 | 0.67 | 0.0 | 0.04 | 11.50 | 0.00 | 2.119 | 12.52 | 0.00 | 5.0 | 95.0 | 0.0 | -0.80 | 1.74 | 0.76 | 0.79 | — | 27468 | 3484 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5ZDH | 6917 | 2023-12-10 | 2018-02-23 | 3.2 | 3.35 | — | 3.3 | 0.016 | 1.32 | 0.0 | 0.07 | 10.62 | 0.01 | 1.598 | 24.89 | 1.42 | 6.2 | 92.2 | 1.6 | -4.98 | 0.75 | 0.75 | 2.34 | 3.3 | 0.004 | 0.77 | 0.0 | 0.05 | 15.22 | 0.00 | 2.084 | 12.10 | 0.24 | 6.1 | 93.2 | 0.7 | -1.51 | 0.73 | 0.77 | 0.83 | 1.49 | 66045 | 8715 | 30 | 0 | 0 | 0 | 0 | logfile |