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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8oL3 | 16944 | 2023-12-07 | 2023-03-30 | 3.5 | 3.67 | 1.73 | 4.2 | 0.009 | 0.67 | 0.0 | 0.06 | 9.52 | 0.01 | 2.263 | 7.26 | 0.00 | 0.0 | 100.0 | 0.0 | -0.18 | 0.42 | 0.77 | 3.49 | 4.2 | 0.003 | 0.45 | 0.0 | 0.06 | 16.45 | 0.00 | 2.289 | 13.91 | 0.40 | 8.1 | 91.9 | 0.0 | -0.56 | 0.88 | 0.36 | 0.74 | 4.57 | 4970 | 330 | 10 | 0 | 0 | 0 | 2500 | logfile |
✔ | 7YK8 | 33890 | 2023-12-07 | 2022-07-22 | 2.8 | 2.62 | 1.74 | 2.8 | 0.005 | 0.66 | 0.0 | 0.06 | 11.56 | 0.00 | 2.465 | 18.20 | 0.00 | 8.5 | 91.5 | 0.0 | -3.55 | 0.46 | 0.82 | 1.92 | 2.8 | 0.005 | 0.74 | 0.0 | 0.05 | 16.89 | 0.00 | 2.356 | 7.06 | 4.49 | 11.5 | 88.5 | 0.0 | -2.99 | 0.45 | 0.44 | 0.82 | 2.22 | 3108 | 450 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XJX | 33236 | 2023-12-07 | 2022-04-18 | 2.7 | 2.78 | 1.76 | 2.9 | 0.008 | 0.81 | 0.0 | 0.06 | 12.77 | 0.00 | 2.438 | 12.63 | 0.00 | 16.4 | 83.6 | 0.0 | -5.02 | 0.48 | 0.81 | 4.92 | 2.9 | 0.006 | 0.81 | 0.0 | 0.05 | 14.46 | 0.00 | 2.387 | 11.15 | 3.70 | 15.6 | 84.4 | 0.0 | -3.69 | 1.14 | 0.45 | 0.81 | 5.25 | 2628 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EFC | 31083 | 2023-12-07 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 14.88 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.004 | 0.75 | 0.0 | 0.05 | 14.46 | 0.00 | 1.841 | 7.51 | 1.08 | 3.2 | 96.8 | 0.0 | 0.63 | 0.92 | 0.80 | 0.85 | 6.49 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 8Q98 | 18271 | 2023-12-08 | 2023-08-20 | 1.75 | 1.75 | 1.77 | 1.8 | 0.011 | 1.66 | 0.0 | 0.07 | 9.83 | 0.01 | 2.543 | 0.00 | 0.00 | 0.5 | 99.5 | 0.0 | -0.80 | 0.22 | 0.65 | 8.64 | 1.8 | 0.002 | 0.51 | 0.0 | 0.05 | 14.79 | 0.00 | 2.418 | 1.99 | 0.00 | 0.2 | 99.8 | 0.0 | -0.45 | 1.38 | 0.43 | 0.90 | 7.86 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8A4L | 15148 | 2023-12-08 | 2022-06-12 | 2.68 | 2.73 | 1.77 | 2.8 | 0.004 | 0.65 | 0.0 | 0.05 | 13.43 | 0.00 | 2.385 | 10.11 | 0.00 | 0.0 | 100.0 | 0.0 | -3.33 | 0.52 | 0.85 | 5.71 | 2.8 | 0.008 | 0.70 | 0.0 | 0.06 | 17.48 | 0.00 | 2.255 | 11.17 | 2.95 | 3.4 | 96.6 | 0.0 | -3.61 | 1.57 | 0.54 | 0.88 | 5.79 | 7755 | 1125 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2023-12-07 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.6 | 0.005 | 0.81 | 0.0 | 0.05 | 16.69 | 0.00 | 2.109 | 15.14 | 0.68 | 9.1 | 90.9 | 0.0 | -4.84 | 3.88 | 0.31 | 0.68 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CPW | 16788 | 2023-12-16 | 2023-03-03 | 1.79 | 1.64 | 1.78 | 1.7 | 0.005 | 0.84 | 0.0 | 0.06 | 14.35 | 0.01 | 2.180 | 3.39 | 0.63 | 1.0 | 99.0 | 0.0 | 2.13 | 0.77 | 0.83 | 8.34 | 1.6 | 0.004 | 0.71 | 0.0 | 0.04 | 14.75 | 0.00 | 2.215 | 4.05 | 0.41 | 1.2 | 98.8 | 0.0 | 3.93 | 0.22 | 0.77 | 0.85 | 7.73 | 36004 | 4152 | 72 | 0 | 38 | 1886 | 0 | logfile |
✔ | 8CPX | 16789 | 2023-12-16 | 2023-03-03 | 1.76 | 1.61 | 1.78 | 1.6 | 0.005 | 0.80 | 0.0 | 0.06 | 14.97 | 0.01 | 2.063 | 5.37 | 0.00 | 1.0 | 99.0 | 0.0 | 2.18 | 0.75 | 0.81 | 8.02 | 1.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.88 | 0.00 | 2.212 | 2.81 | 1.31 | 1.8 | 98.2 | 0.0 | 4.58 | 0.39 | 0.78 | 0.85 | 7.90 | 35827 | 4152 | 72 | 0 | 38 | 1709 | 0 | logfile |
✔ | 8CPV | 16787 | 2023-12-16 | 2023-03-03 | 1.76 | 1.73 | 1.80 | 1.7 | 0.006 | 0.91 | 0.0 | 0.07 | 14.41 | 0.01 | 2.182 | 2.58 | 0.00 | 1.0 | 99.0 | 0.0 | 2.15 | 0.78 | 0.84 | 8.93 | 1.7 | 0.002 | 0.49 | 0.0 | 0.03 | 14.99 | 0.00 | 2.274 | 3.00 | 0.00 | 1.8 | 98.2 | 0.0 | 4.87 | 1.19 | 0.81 | 0.87 | 8.51 | 35855 | 4152 | 72 | 0 | 38 | 1737 | 0 | logfile |
✔ | 8CPU | 16786 | 2023-12-16 | 2023-03-03 | 1.76 | 1.54 | 1.80 | 1.6 | 0.004 | 0.71 | 0.0 | 0.05 | 14.91 | 0.01 | 1.976 | 4.95 | 0.00 | 1.0 | 99.0 | 0.0 | 2.29 | 0.71 | 0.77 | 8.55 | 1.6 | 0.004 | 0.62 | 0.0 | 0.04 | 15.65 | 0.00 | 2.051 | 5.31 | 0.57 | 1.8 | 98.2 | 0.0 | 3.90 | 0.29 | 0.73 | 0.80 | 8.29 | 35823 | 4152 | 72 | 0 | 38 | 1705 | 0 | logfile |
✔ | 8CPT | 16785 | 2023-12-16 | 2023-03-03 | 1.79 | 1.72 | 1.81 | 1.8 | 0.004 | 0.72 | 0.0 | 0.05 | 15.65 | 0.01 | 2.157 | 1.26 | 0.49 | 1.0 | 99.0 | 0.0 | 2.30 | 0.80 | 0.85 | 8.36 | 1.8 | 0.003 | 0.58 | 0.0 | 0.04 | 16.07 | 0.00 | 2.206 | 1.20 | 0.65 | 1.8 | 98.2 | 0.0 | 4.32 | 0.33 | 0.81 | 0.87 | 8.14 | 36024 | 4152 | 72 | 0 | 38 | 1906 | 0 | logfile |
✔ | 8HF7 | 34715 | 2023-12-08 | 2022-11-09 | 3.8 | 4.66 | 1.82 | 4.2 | 0.006 | 1.34 | 2.0 | 0.07 | 14.02 | 0.01 | 2.294 | 7.91 | 0.61 | 5.9 | 93.5 | 0.6 | -3.03 | 0.63 | 0.74 | 0.62 | 4.3 | 0.003 | 0.77 | 0.0 | 0.04 | 15.80 | 0.00 | 2.159 | 15.06 | 0.20 | 6.5 | 93.1 | 0.4 | 0.24 | 0.58 | 0.64 | 0.77 | 0.49 | 8978 | 1126 | 4 | 0 | 26 | 0 | 0 | logfile |
✔ | 8CEU | 16613 | 2023-12-15 | 2023-02-02 | 1.83 | 1.74 | 1.82 | 1.7 | 0.009 | 1.57 | 16.0 | 0.11 | 21.73 | 0.03 | 1.830 | 0.53 | 0.65 | 2.7 | 97.2 | 0.0 | -1.11 | 0.79 | 0.85 | 6.99 | 1.7 | 0.005 | 0.93 | 16.0 | 0.05 | 22.12 | 0.01 | 1.797 | 4.66 | 0.37 | 2.0 | 98.0 | 0.0 | -0.28 | 0.77 | 0.84 | 0.89 | 6.84 | 92838 | 3076 | 79 | 2872 | 304 | 6830 | 0 | logfile |
✔ | 8CAM | 16530 | 2023-12-14 | 2023-01-24 | 1.86 | 1.57 | 1.83 | 1.7 | 0.010 | 1.53 | 0.0 | 0.11 | 21.86 | 0.03 | 1.821 | 0.54 | 0.27 | 3.0 | 96.8 | 0.1 | -1.28 | 0.64 | 0.76 | 6.57 | 1.6 | 0.006 | 0.97 | 0.0 | 0.05 | 22.27 | 0.01 | 1.747 | 7.43 | 1.24 | 2.5 | 97.5 | 0.0 | -0.04 | 0.34 | 0.73 | 0.82 | 6.46 | 86648 | 2767 | 65 | 2724 | 322 | 6113 | 0 | logfile |
✔ | 7QK5 | 14038 | 2023-12-09 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.10 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.003 | 0.62 | 0.0 | 0.05 | 18.17 | 0.00 | 2.236 | 3.44 | 2.74 | 3.4 | 96.6 | 0.0 | -1.74 | 1.48 | 0.36 | 0.82 | 7.31 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |
✔ | 8CPM | 16783 | 2023-12-16 | 2023-03-03 | 1.81 | 1.57 | 1.84 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 15.21 | 0.01 | 1.916 | 7.77 | 0.00 | 1.0 | 99.0 | 0.0 | 2.32 | 0.70 | 0.75 | 7.56 | 1.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.38 | 0.00 | 2.043 | 7.22 | 0.11 | 2.3 | 97.7 | 0.0 | 4.30 | 0.37 | 0.71 | 0.77 | 7.46 | 36090 | 4152 | 72 | 0 | 38 | 1972 | 0 | logfile |
✔ | 7oZH | 13124 | 2023-12-07 | 2021-06-28 | 3.02 | 3.20 | 1.84 | 3.3 | 0.024 | 1.40 | 0.0 | 0.09 | 7.44 | 0.01 | 2.546 | 14.72 | 0.00 | 5.4 | 94.6 | 0.0 | -2.78 | 0.33 | 0.60 | 4.68 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 15.03 | 0.00 | 2.382 | 17.11 | 2.05 | 8.2 | 91.8 | 0.0 | -2.61 | 2.53 | 0.40 | 0.69 | 0.33 | 3890 | 580 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2023-12-07 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.75 | 0.0 | 0.04 | 11.01 | 0.00 | 2.047 | 15.36 | 0.00 | 9.8 | 90.2 | 0.0 | -4.85 | 1.54 | 0.57 | 0.75 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6S61 | 10101 | 2023-12-12 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.003 | 0.58 | 0.0 | 0.03 | 14.85 | 0.00 | 1.796 | 5.05 | 0.65 | 1.3 | 98.7 | 0.0 | 4.51 | 0.74 | 0.80 | 0.90 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |