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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YVH | 34127 | 2023-12-07 | 2022-08-19 | 3.6 | 3.83 | 3.91 | 3.7 | 0.006 | 1.11 | 2.0 | 0.06 | 13.30 | 0.01 | 1.941 | 15.71 | 1.58 | 8.7 | 90.8 | 0.5 | -4.17 | 0.68 | 0.74 | 2.43 | 3.7 | 0.003 | 0.82 | 0.0 | 0.04 | 15.81 | 0.00 | 2.218 | 11.41 | 1.26 | 4.8 | 95.2 | 0.0 | -1.09 | 1.45 | 0.70 | 0.77 | 2.02 | 3124 | 420 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CYV | 27085 | 2023-12-08 | 2022-05-24 | 3.5 | 3.17 | 3.47 | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 10.01 | 0.00 | 2.423 | 5.36 | 0.00 | 5.9 | 94.1 | 0.0 | -4.11 | 0.58 | 0.72 | 2.74 | 3.4 | 0.004 | 0.75 | 0.0 | 0.05 | 16.08 | 0.00 | 2.184 | 9.50 | 2.17 | 7.0 | 92.4 | 0.6 | -4.20 | 1.35 | 0.59 | 0.75 | 2.25 | 5964 | 864 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C3Y | 16415 | 2023-12-08 | 2022-12-29 | 3.8 | 4.37 | 3.84 | 4.1 | 0.018 | 1.56 | 0.0 | 0.10 | 10.95 | 0.01 | 2.226 | 7.90 | 0.48 | 3.7 | 96.0 | 0.3 | 0.34 | 0.79 | 0.76 | 0.80 | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 15.81 | 0.00 | 2.218 | 18.74 | 0.48 | 5.4 | 94.4 | 0.2 | 0.62 | 2.76 | 0.78 | 0.77 | 1.04 | 7580 | 929 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VH7 | 21200 | 2023-12-07 | 2020-01-09 | 3.8 | 3.84 | — | 4.1 | 0.007 | 1.03 | 0.0 | 0.05 | 15.14 | 0.01 | 2.318 | 28.35 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.54 | 0.62 | 2.62 | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 16.44 | 0.00 | 2.317 | 9.92 | 0.71 | 5.9 | 94.1 | 0.0 | -4.23 | 3.68 | 0.58 | 0.66 | 1.63 | 4878 | 642 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G7J | 29813 | 2023-12-14 | 2023-02-16 | 3.4 | 3.70 | 3.39 | 3.9 | 0.015 | 1.46 | 0.0 | 0.08 | 9.30 | 0.01 | 2.369 | 1.16 | 0.00 | 0.7 | 99.2 | 0.1 | 0.22 | 0.65 | 0.71 | 1.18 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.82 | 0.00 | 2.197 | 5.67 | 0.27 | 2.7 | 97.3 | 0.0 | 1.59 | 2.21 | 0.68 | 0.72 | 1.32 | 27461 | 3682 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YEA | 33768 | 2023-12-11 | 2022-07-05 | 3.82 | 4.08 | 3.84 | 3.9 | 0.008 | 0.84 | 0.0 | 0.05 | 13.81 | 0.01 | 2.099 | 22.75 | 0.00 | 7.6 | 92.4 | 0.0 | -1.40 | 0.81 | 0.72 | 1.21 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 15.73 | 0.00 | 2.132 | 13.98 | 0.29 | 3.9 | 96.1 | 0.0 | 0.40 | 1.02 | 0.82 | 0.72 | 0.46 | 16016 | 2034 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RL4 | 24514 | 2023-12-07 | 2021-07-23 | 2.86 | 2.50 | — | 3.1 | 0.015 | 1.16 | 0.0 | 0.07 | 16.04 | 0.01 | 2.535 | 12.04 | 0.00 | 12.5 | 87.5 | 0.0 | -4.62 | 0.39 | 0.82 | 4.55 | 3.1 | 0.009 | 0.89 | 0.0 | 0.05 | 16.66 | 0.00 | 2.208 | 17.42 | 3.00 | 7.0 | 93.0 | 0.0 | -4.67 | 1.13 | 0.39 | 0.84 | 4.85 | 4620 | 680 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N9Y | 0383 | 2023-12-07 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 4.80 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.57 | 0.00 | 2.156 | 13.06 | 0.00 | 7.8 | 92.2 | 0.0 | -0.84 | 1.77 | 0.40 | 0.79 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BK8 | 16092 | 2023-12-15 | 2022-11-08 | 2.9 | 2.39 | 2.83 | 2.7 | 0.003 | 0.66 | 0.0 | 0.05 | 13.28 | 0.01 | 2.252 | 5.52 | 0.00 | 3.2 | 96.8 | 0.0 | -0.31 | 0.59 | 0.80 | 4.12 | 2.6 | 0.005 | 0.62 | 0.0 | 0.05 | 16.58 | 0.00 | 2.183 | 7.76 | 2.00 | 3.3 | 96.7 | 0.0 | 0.09 | 0.45 | 0.59 | 0.83 | 4.19 | 32500 | 4044 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ENV | 28280 | 2023-12-14 | 2022-09-30 | 3.42 | 3.76 | 3.61 | 3.8 | 0.004 | 0.68 | 0.0 | 0.05 | 13.29 | 0.01 | 2.047 | 13.13 | 0.04 | 7.3 | 92.5 | 0.2 | -0.95 | 0.45 | 0.80 | 2.00 | 3.8 | 0.006 | 0.80 | 0.0 | 0.05 | 16.30 | 0.01 | 2.036 | 17.46 | 1.35 | 9.1 | 90.6 | 0.3 | -1.31 | 0.49 | 0.45 | 0.82 | 1.49 | 80436 | 10698 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TAZ | 41143 | 2023-12-14 | 2023-06-28 | 3.75 | 4.14 | 4.15 | 3.9 | 0.017 | 0.94 | 1.0 | 0.05 | 15.30 | 0.01 | 2.119 | 15.61 | 0.03 | 7.3 | 92.4 | 0.3 | -1.61 | 0.70 | 0.60 | 1.06 | 3.9 | 0.011 | 0.78 | 0.0 | 0.05 | 16.31 | 0.00 | 2.159 | 12.31 | 0.57 | 7.8 | 92.1 | 0.1 | -1.29 | 2.63 | 0.75 | 0.76 | 1.29 | 28269 | 3591 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GX5 | 0077 | 2023-12-07 | 2018-06-26 | 3.2 | 2.51 | 2.94 | 3.2 | 0.017 | 1.20 | 0.0 | 0.11 | 16.09 | 0.01 | 2.596 | 5.96 | 4.94 | 4.3 | 95.7 | 0.0 | -3.50 | 0.85 | 0.88 | 5.60 | 3.2 | 0.004 | 0.76 | 0.0 | 0.05 | 17.31 | 0.00 | 2.207 | 9.16 | 1.65 | 5.8 | 94.2 | 0.0 | -2.81 | 0.66 | 0.82 | 0.85 | 4.84 | 2133 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BCP | 15967 | 2023-12-11 | 2022-10-17 | 3.88 | 3.53 | 3.81 | 3.7 | 0.003 | 0.53 | 0.0 | 0.04 | 17.06 | 0.00 | 2.151 | 10.41 | 0.30 | 3.2 | 96.7 | 0.1 | -0.67 | 0.61 | 0.59 | 0.14 | 3.6 | 0.005 | 0.65 | 0.0 | 0.05 | 17.70 | 0.00 | 2.055 | 13.60 | 0.44 | 4.4 | 95.5 | 0.1 | -1.14 | 2.15 | 0.76 | 0.81 | 2.03 | 18171 | 2337 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YBJ | 33723 | 2023-12-13 | 2022-06-29 | 3.73 | 3.85 | 3.73 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 13.01 | 0.00 | 2.110 | 9.11 | 0.00 | 4.3 | 95.7 | 0.0 | -0.43 | 0.74 | 0.76 | 1.78 | 3.8 | 0.007 | 0.75 | 0.0 | 0.05 | 15.15 | 0.00 | 2.116 | 14.48 | 0.45 | 7.0 | 93.0 | 0.0 | -0.67 | 0.57 | 0.74 | 0.77 | 1.84 | 25719 | 3282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DZ3 | 27787 | 2023-12-10 | 2022-08-06 | 2.7 | 2.85 | 2.67 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 15.53 | 0.00 | 1.994 | 7.02 | 3.48 | 3.5 | 96.5 | 0.0 | 0.07 | 0.65 | 0.83 | 3.90 | 2.9 | 0.004 | 0.62 | 0.0 | 0.04 | 16.35 | 0.00 | 2.121 | 7.47 | 3.85 | 4.8 | 95.2 | 0.0 | -0.05 | 0.34 | 0.64 | 0.83 | 4.06 | 12726 | 1659 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TEA | 41179 | 2023-12-08 | 2023-07-05 | 3.4 | 2.31 | — | 2.0 | 0.004 | 0.74 | 0.0 | 0.05 | 13.18 | 0.01 | 2.256 | 5.80 | 0.30 | 4.4 | 95.6 | 0.0 | -0.71 | 0.72 | 0.68 | 2.75 | 2.1 | 0.004 | 0.69 | 0.0 | 0.04 | 15.16 | 0.00 | 2.117 | 12.61 | 0.75 | 5.6 | 94.4 | 0.0 | -0.68 | 0.39 | 0.72 | 0.69 | 2.44 | 6054 | 780 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BMR | 16122 | 2023-12-08 | 2022-11-10 | 3.8 | 4.05 | 3.86 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.55 | 0.00 | 2.228 | 8.06 | 0.00 | 5.0 | 95.0 | 0.0 | -0.04 | 0.69 | 0.82 | 1.29 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 15.95 | 0.00 | 2.284 | 8.92 | 0.44 | 4.4 | 95.6 | 0.0 | 0.55 | 0.34 | 0.69 | 0.82 | 1.01 | 6330 | 808 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ADE | 15361 | 2023-12-07 | 2022-07-08 | 2.78 | 2.65 | 2.55 | 2.7 | 0.012 | 1.58 | 0.0 | 0.11 | 9.64 | 0.00 | 2.213 | 3.08 | 0.00 | 3.4 | 96.6 | 0.0 | -4.12 | 0.74 | 0.76 | 3.27 | 3.0 | 0.005 | 0.75 | 0.0 | 0.05 | 15.07 | 0.00 | 2.172 | 13.13 | 1.83 | 2.9 | 97.1 | 0.0 | -2.61 | 0.73 | 0.77 | 0.83 | 4.24 | 5026 | 644 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YL7 | 33903 | 2023-12-07 | 2022-07-25 | 3.3 | 3.54 | 3.17 | 3.5 | 0.004 | 1.05 | 0.0 | 0.04 | 11.95 | 0.00 | 2.196 | 22.56 | 0.00 | 4.9 | 95.1 | 0.0 | -5.16 | 0.45 | 0.78 | 4.82 | 3.4 | 0.004 | 0.58 | 0.0 | 0.04 | 13.06 | 0.00 | 2.198 | 5.64 | 0.31 | 8.7 | 91.3 | 0.0 | -5.11 | 0.75 | 0.44 | 0.77 | 5.01 | 2988 | 402 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2023-12-09 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |