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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EJL | 28186 | 2023-12-12 | 2022-09-17 | 3.9 | 4.30 | 3.90 | 4.1 | 0.005 | 0.54 | 0.0 | 0.04 | 11.63 | 0.00 | 0.636 | 9.14 | 3.04 | 2.2 | 97.8 | 0.0 | 1.75 | 0.68 | 0.85 | 1.79 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 14.77 | 0.00 | 2.108 | 10.38 | 0.37 | 2.3 | 97.7 | 0.0 | 2.24 | 0.60 | 0.68 | 0.85 | 1.21 | 22155 | 3095 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K63 | 22687 | 2023-12-12 | 2020-09-18 | 3.03 | 3.30 | — | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 26.72 | 0.00 | 2.158 | 6.92 | 0.09 | 2.0 | 98.0 | 0.0 | 0.98 | 0.76 | 0.80 | 3.33 | 3.2 | 0.003 | 0.55 | 0.0 | 0.03 | 27.04 | 0.00 | 2.202 | 8.30 | 0.18 | 2.6 | 97.4 | 0.0 | 1.90 | 0.42 | 0.78 | 0.84 | 2.67 | 18330 | 1298 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7VUH | 32128 | 2023-12-08 | 2021-11-02 | 3.22 | 2.19 | — | 1.9 | 0.004 | 0.66 | 0.0 | 0.04 | 13.68 | 0.00 | 2.099 | 13.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.87 | 0.71 | 0.69 | 2.81 | 1.9 | 0.004 | 0.65 | 0.0 | 0.04 | 15.92 | 0.00 | 2.061 | 14.58 | 0.22 | 6.0 | 94.0 | 0.0 | -1.32 | 0.37 | 0.72 | 0.73 | 2.34 | 8302 | 1042 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YK7 | 33889 | 2023-12-08 | 2022-07-21 | 2.75 | 2.37 | 2.86 | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 14.12 | 0.00 | 2.115 | 9.26 | 0.11 | 6.0 | 94.0 | 0.0 | -0.35 | 0.76 | 0.76 | 3.12 | 2.2 | 0.003 | 0.67 | 0.0 | 0.04 | 16.89 | 0.00 | 2.155 | 8.97 | 1.92 | 4.6 | 95.4 | 0.0 | 0.02 | 1.16 | 0.78 | 0.79 | 2.50 | 8760 | 1122 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8H8J | 34549 | 2023-12-08 | 2022-10-23 | 3.2 | 2.26 | 3.27 | 2.1 | 0.003 | 0.64 | 0.0 | 0.04 | 10.39 | 0.00 | 1.939 | 9.85 | 2.59 | 2.3 | 97.6 | 0.1 | -0.78 | 0.71 | 0.72 | 2.45 | 2.0 | 0.003 | 0.64 | 0.0 | 0.04 | 13.96 | 0.00 | 2.022 | 13.95 | 0.65 | 3.9 | 96.1 | 0.0 | 0.62 | 0.56 | 0.74 | 0.77 | 2.36 | 8842 | 1139 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7T20 | 25607 | 2023-12-12 | 2021-12-02 | 4.7 | 8.85 | — | 7.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.59 | 0.00 | 2.079 | 7.50 | 3.24 | 2.3 | 97.6 | 0.2 | 0.68 | 0.91 | 0.76 | — | 7.6 | 0.003 | 0.62 | 0.0 | 0.04 | 11.89 | 0.00 | 1.934 | 19.44 | 0.00 | 3.4 | 96.6 | 0.0 | 1.16 | 1.63 | 0.92 | 0.72 | — | 21106 | 2661 | 11 | 10 | 8 | 0 | 0 | logfile |
✔ | 7S8P | 24900 | 2023-12-08 | 2021-09-18 | 2.6 | 2.11 | 2.62 | 1.8 | 0.005 | 0.75 | 0.0 | 0.05 | 12.74 | 0.00 | 2.183 | 3.18 | 0.00 | 5.8 | 94.2 | 0.0 | -2.01 | 0.73 | 0.75 | 4.73 | 1.9 | 0.003 | 0.62 | 0.0 | 0.04 | 15.34 | 0.00 | 2.120 | 3.18 | 1.62 | 5.1 | 94.9 | 0.0 | 0.50 | 0.37 | 0.84 | 0.84 | 3.79 | 8093 | 1089 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7PMY | 13544 | 2023-12-09 | 2021-09-04 | 3.8 | 4.01 | 3.76 | 3.9 | 0.002 | 0.46 | 0.0 | 0.04 | 9.15 | 0.00 | 2.008 | 5.14 | 1.40 | 2.0 | 97.9 | 0.2 | 0.55 | 0.66 | 0.79 | 2.91 | 3.9 | 0.004 | 0.56 | 0.0 | 0.04 | 12.27 | 0.00 | 1.986 | 8.00 | 0.18 | 3.8 | 96.2 | 0.0 | 0.59 | 0.78 | 0.65 | 0.80 | 1.97 | 10499 | 659 | 2 | 0 | 0 | 0 | 5276 | logfile |
✔ | 8EL8 | 28224 | 2023-12-07 | 2022-09-23 | 3.2 | 3.53 | 3.33 | 3.5 | 0.007 | 0.70 | 0.0 | 0.04 | 13.20 | 0.00 | 2.403 | 2.38 | 0.00 | 1.7 | 98.3 | 0.0 | 0.75 | 0.66 | 0.85 | 2.31 | 3.5 | 0.003 | 0.45 | 0.0 | 0.04 | 15.16 | 0.00 | 2.353 | 2.27 | 0.00 | 2.4 | 97.6 | 0.0 | 1.11 | 0.26 | 0.67 | 0.85 | 2.07 | 4467 | 597 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BMW | 16126 | 2023-12-14 | 2022-11-11 | 3.5 | 4.40 | — | 4.0 | 0.003 | 0.54 | 1.0 | 0.04 | 12.22 | 0.00 | 2.196 | 11.99 | 0.49 | 6.1 | 93.8 | 0.1 | 0.69 | 0.90 | 0.85 | 0.96 | 4.0 | 0.005 | 0.80 | 0.0 | 0.04 | 15.39 | 0.00 | 2.091 | 21.60 | 0.71 | 6.6 | 93.3 | 0.1 | -0.13 | 0.83 | 0.90 | 0.85 | 0.67 | 28658 | 3475 | 15 | 48 | 0 | 0 | 0 | logfile |
✔ | 8F2S | 28826 | 2023-12-11 | 2022-11-08 | 2.9 | 3.73 | 2.80 | 3.3 | 0.015 | 0.82 | 0.0 | 0.18 | 16.45 | 0.00 | 2.129 | 3.82 | 0.00 | 4.3 | 95.7 | 0.0 | 0.98 | 0.81 | 0.89 | 4.25 | 3.3 | 0.005 | 0.72 | 0.0 | 0.08 | 15.82 | 0.00 | 2.236 | 4.98 | 0.59 | 2.8 | 97.2 | 0.0 | 1.85 | 0.35 | 0.76 | 0.85 | 3.59 | 17158 | 2023 | 15 | 0 | 38 | 0 | 0 | logfile |
✔ | 5VA2 | 8651 | 2023-12-11 | 2017-03-24 | 3.8 | 5.28 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 11.18 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.64 | 0.74 | -0.32 | 4.3 | 0.004 | 0.98 | 0.0 | 0.05 | 16.04 | 0.00 | 2.082 | 26.45 | 0.70 | 5.3 | 94.3 | 0.4 | -1.34 | 2.67 | 0.67 | 0.83 | 0.03 | 17576 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SZi | 25567 | 2023-12-08 | 2021-11-27 | 2.7 | 3.34 | — | 3.1 | 0.002 | 0.44 | 0.0 | 0.04 | 13.00 | 0.00 | 2.265 | 3.93 | 0.12 | 3.5 | 96.4 | 0.1 | 0.36 | 0.70 | 0.86 | 5.04 | 3.1 | 0.004 | 0.54 | 0.0 | 0.04 | 14.28 | 0.00 | 2.186 | 3.74 | 0.96 | 3.8 | 96.1 | 0.1 | 0.05 | 0.24 | 0.72 | 0.88 | 5.17 | 8089 | 1038 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HBD | 34619 | 2023-12-08 | 2022-10-28 | 2.99 | 2.40 | 2.80 | 3.0 | 0.003 | 0.71 | 0.0 | 0.04 | 16.47 | 0.00 | 1.912 | 13.34 | 1.85 | 3.8 | 96.0 | 0.2 | 0.26 | 0.74 | 0.76 | 1.67 | 2.2 | 0.003 | 0.70 | 0.0 | 0.04 | 17.55 | 0.00 | 2.050 | 14.61 | 2.62 | 3.7 | 96.3 | 0.0 | 0.20 | 0.59 | 0.76 | 0.79 | 1.63 | 8803 | 1158 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DPi | 27636 | 2023-12-08 | 2022-07-15 | 3.4 | 2.28 | 3.42 | 2.1 | 0.002 | 0.55 | 0.0 | 0.06 | 10.82 | 0.00 | 2.211 | 4.16 | 0.98 | 1.3 | 98.6 | 0.1 | 1.79 | 0.73 | 0.68 | 1.99 | 2.1 | 0.003 | 0.64 | 0.0 | 0.04 | 14.09 | 0.00 | 2.058 | 6.49 | 0.98 | 2.7 | 97.3 | 0.0 | 0.63 | 0.59 | 0.75 | 0.73 | 2.13 | 8150 | 1093 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RTT | 24688 | 2023-12-08 | 2021-08-15 | 3.5 | 3.91 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 17.15 | 0.00 | 2.239 | 5.02 | 0.00 | 3.6 | 96.4 | 0.0 | 2.65 | 0.60 | 0.73 | 1.03 | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 15.78 | 0.00 | 2.186 | 6.22 | 0.00 | 4.2 | 95.8 | 0.0 | 3.70 | 1.65 | 0.61 | 0.73 | 0.04 | 6268 | 791 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 8E3Q | 27870 | 2023-12-10 | 2022-08-17 | 2.68 | 2.93 | 2.73 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.14 | 0.00 | 2.219 | 8.89 | 0.14 | 4.7 | 95.0 | 0.3 | -0.58 | 0.74 | 0.84 | 4.68 | 2.9 | 0.002 | 0.58 | 0.0 | 0.04 | 16.17 | 0.00 | 2.166 | 8.77 | 1.65 | 4.7 | 95.1 | 0.2 | -0.53 | 0.37 | 0.74 | 0.85 | 4.06 | 12739 | 1603 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6V4o | 21043 | 2023-12-13 | 2019-11-28 | 2.8 | 3.15 | — | 3.1 | 0.011 | 0.81 | 0.0 | 0.08 | 14.35 | 0.00 | 1.602 | 7.76 | 2.95 | 9.9 | 90.1 | 0.0 | -4.27 | 0.80 | 0.84 | 3.13 | 3.1 | 0.005 | 0.69 | 0.0 | 0.04 | 16.04 | 0.00 | 2.174 | 9.66 | 3.43 | 4.6 | 95.4 | 0.0 | -1.35 | 0.58 | 0.79 | 0.86 | 3.57 | 24796 | 3204 | 20 | 0 | 16 | 0 | 0 | logfile |
✔ | 6VD7 | 21150 | 2023-12-11 | 2019-12-23 | 3.02 | 3.29 | — | 3.3 | 0.008 | 0.76 | 0.0 | 0.05 | 13.38 | 0.00 | 2.284 | 6.84 | 0.78 | 11.7 | 88.3 | 0.0 | -2.54 | 0.69 | 0.85 | 2.53 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.36 | 0.00 | 2.184 | 7.38 | 0.44 | 7.7 | 92.3 | 0.0 | 0.68 | 0.45 | 0.67 | 0.84 | 2.32 | 16506 | 2079 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oDF | 12827 | 2023-12-08 | 2021-04-29 | 2.66 | 3.20 | — | 3.1 | 0.003 | 0.49 | 0.0 | 0.04 | 18.80 | 0.00 | 1.952 | 6.12 | 0.00 | 1.4 | 98.6 | 0.0 | 1.47 | 0.75 | 0.83 | 3.58 | 3.1 | 0.007 | 0.60 | 0.0 | 0.04 | 19.84 | 0.00 | 1.921 | 8.50 | 2.54 | 2.1 | 97.9 | 0.0 | 1.59 | 0.89 | 0.70 | 0.81 | 3.58 | 6847 | 703 | 7 | 78 | 2 | 5 | 0 | logfile |