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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JG7 | 22313 | 2023-12-11 | 2020-07-18 | 3.5 | 2.41 | 3.57 | 3.4 | 0.008 | 1.54 | 0.0 | 0.00 | 6.82 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 96.9 | 0.1 | -0.73 | 0.63 | 0.55 | — | 2.3 | 0.006 | 1.16 | 0.0 | 0.00 | 7.34 | 0.01 | 2.119 | 4.50 | 0.00 | 14.7 | 85.1 | 0.1 | -2.00 | 1.65 | 0.74 | 0.72 | — | 19316 | 4818 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 7JGB | 22320 | 2023-12-09 | 2020-07-18 | 3.5 | 2.38 | 3.52 | 3.7 | 0.007 | 0.64 | 0.0 | 0.04 | 13.53 | 0.01 | 2.372 | 3.93 | 0.45 | 1.9 | 98.1 | 0.0 | -0.15 | 0.66 | 0.70 | 2.65 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 15.10 | 0.00 | 2.116 | 8.81 | 0.60 | 2.5 | 97.5 | 0.0 | 4.11 | 1.13 | 0.68 | 0.71 | 1.73 | 7261 | 1022 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG9 | 22315 | 2023-12-12 | 2020-07-18 | 3.4 | 2.37 | 3.49 | 3.4 | 0.009 | 1.56 | 0.0 | 0.20 | 9.66 | 0.01 | 2.424 | 0.51 | 0.00 | 2.9 | 96.8 | 0.3 | -1.25 | 0.61 | 0.54 | — | 2.3 | 0.005 | 1.01 | 0.0 | 0.10 | 7.81 | 0.00 | 2.245 | 2.64 | 0.00 | 14.8 | 85.1 | 0.1 | -1.49 | 1.31 | 0.72 | 0.71 | — | 19569 | 4826 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 7oDF | 12827 | 2023-12-08 | 2021-04-29 | 2.66 | 3.20 | — | 3.1 | 0.003 | 0.49 | 0.0 | 0.04 | 18.80 | 0.00 | 1.952 | 6.12 | 0.00 | 1.4 | 98.6 | 0.0 | 1.47 | 0.75 | 0.83 | 3.58 | 3.1 | 0.007 | 0.60 | 0.0 | 0.04 | 19.84 | 0.00 | 1.921 | 8.50 | 2.54 | 2.1 | 97.9 | 0.0 | 1.59 | 0.89 | 0.70 | 0.81 | 3.58 | 6847 | 703 | 7 | 78 | 2 | 5 | 0 | logfile |
✔ | 5U07 | 8477 | 2023-12-14 | 2016-11-23 | 3.8 | 3.94 | — | 3.8 | 0.010 | 1.35 | 5.0 | 0.07 | 14.52 | 0.01 | 1.958 | 28.98 | 2.31 | 4.8 | 94.0 | 1.1 | -2.19 | 0.78 | 0.77 | 1.62 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.16 | 0.00 | 2.077 | 16.34 | 0.53 | 4.0 | 95.9 | 0.2 | 0.08 | 2.59 | 0.79 | 0.81 | 1.59 | 27681 | 3310 | 14 | 93 | 0 | 0 | 0 | logfile |
✔ | 6PWC | 20505 | 2023-12-07 | 2019-07-22 | 4.9 | 5.55 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.05 | 4.68 | 0.01 | 2.345 | 2.19 | 0.00 | 1.3 | 98.7 | 0.0 | -0.09 | 0.61 | 0.67 | — | 4.6 | 0.004 | 0.75 | 0.0 | 0.04 | 6.37 | 0.00 | 2.094 | 19.59 | 0.00 | 7.2 | 92.8 | 0.0 | -0.38 | 1.57 | 0.61 | 0.59 | — | 5879 | 1055 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VD7 | 21150 | 2023-12-11 | 2019-12-23 | 3.02 | 3.29 | — | 3.3 | 0.008 | 0.76 | 0.0 | 0.05 | 13.38 | 0.00 | 2.284 | 6.84 | 0.78 | 11.7 | 88.3 | 0.0 | -2.54 | 0.69 | 0.85 | 2.53 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.36 | 0.00 | 2.184 | 7.38 | 0.44 | 7.7 | 92.3 | 0.0 | 0.68 | 0.45 | 0.67 | 0.84 | 2.32 | 16506 | 2079 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CS9 | 26960 | 2023-12-09 | 2022-05-12 | 2.74 | 1.95 | — | 1.6 | 0.006 | 0.85 | 0.0 | 0.05 | 18.63 | 0.01 | 2.218 | 10.20 | 3.66 | 2.2 | 97.5 | 0.3 | 0.33 | 0.82 | 0.81 | 3.50 | 1.6 | 0.003 | 0.66 | 0.0 | 0.04 | 17.59 | 0.00 | 2.142 | 8.18 | 2.81 | 1.8 | 98.2 | 0.0 | 1.60 | 0.38 | 0.83 | 0.83 | 3.41 | 60944 | 7677 | 39 | 0 | 27 | 268 | 0 | logfile |
✔ | 7BEF | 12156 | 2023-12-16 | 2020-12-23 | 4.5 | 5.02 | — | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 13.21 | 0.00 | 2.003 | 10.53 | 1.70 | 3.8 | 96.1 | 0.1 | -2.16 | 0.89 | 0.69 | — | 4.0 | 0.007 | 0.83 | 0.0 | 0.04 | 15.07 | 0.01 | 2.027 | 26.73 | 0.00 | 8.0 | 91.9 | 0.1 | -0.57 | 1.43 | 0.92 | 0.82 | — | 33867 | 3927 | 9 | 146 | 0 | 0 | 0 | logfile |
✔ | 7LP9 | 23473 | 2023-12-12 | 2021-02-11 | 2.63 | 3.37 | 2.55 | 3.0 | 0.010 | 1.07 | 0.0 | 0.20 | 22.02 | 0.00 | 2.040 | 4.68 | 0.00 | 2.7 | 97.3 | 0.0 | 1.57 | 0.73 | 0.84 | 3.99 | 3.0 | 0.003 | 0.46 | 0.0 | 0.04 | 15.62 | 0.00 | 2.245 | 3.72 | 1.04 | 2.6 | 97.4 | 0.0 | 1.54 | 0.39 | 0.72 | 0.85 | 2.68 | 20977 | 2536 | 8 | 0 | 46 | 0 | 0 | logfile |
✔ | 6TY8 | 20581 | 2023-12-10 | 2019-08-08 | 3.0 | 3.11 | — | 3.1 | 0.008 | 0.99 | 1.0 | 0.06 | 9.80 | 0.01 | 2.210 | 4.88 | 0.75 | 3.0 | 96.9 | 0.1 | -3.24 | 0.57 | 0.86 | 3.98 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.93 | 0.00 | 2.102 | 4.84 | 2.44 | 1.8 | 98.2 | 0.0 | 0.38 | 1.69 | 0.58 | 0.89 | 3.22 | 13607 | 1694 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KiZ | 0695 | 2023-12-14 | 2019-07-20 | 4.5 | 4.53 | — | 3.5 | 0.007 | 0.86 | 0.0 | 0.05 | 23.34 | 0.01 | 2.253 | 5.93 | 0.00 | 6.7 | 93.3 | 0.0 | -3.09 | 0.88 | 0.83 | — | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 23.10 | 0.00 | 2.156 | 13.09 | 0.00 | 5.6 | 94.4 | 0.0 | -1.03 | 0.78 | 0.88 | 0.84 | — | 19889 | 1762 | 15 | 290 | 1 | 0 | 0 | logfile |
✔ | 7X10 | 32932 | 2023-12-08 | 2022-02-22 | 2.93 | 2.29 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.69 | 0.00 | 2.192 | 2.72 | 0.00 | 7.5 | 92.5 | 0.0 | -1.18 | 0.75 | 0.73 | 2.91 | 2.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.44 | 0.00 | 2.145 | 7.34 | 1.58 | 5.6 | 94.4 | 0.0 | -0.30 | 1.17 | 0.76 | 0.76 | 2.05 | 8674 | 1098 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W0P | 32247 | 2023-12-09 | 2021-11-18 | 3.16 | 2.41 | 3.26 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 12.42 | 0.00 | 2.199 | 12.84 | 0.00 | 6.6 | 93.3 | 0.1 | -0.97 | 0.67 | 0.67 | 2.56 | 3.2 | 0.004 | 0.72 | 0.0 | 0.05 | 15.18 | 0.00 | 2.184 | 13.33 | 0.30 | 7.6 | 92.3 | 0.1 | -0.77 | 0.41 | 0.69 | 0.70 | 2.46 | 9091 | 1158 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SHN | 25131 | 2023-12-09 | 2021-10-09 | 3.1 | 3.32 | — | 3.3 | 0.017 | 1.35 | 6.0 | 0.08 | 16.38 | 0.01 | 2.330 | 8.40 | 0.20 | 3.5 | 96.5 | 0.0 | -6.40 | 0.65 | 0.84 | 2.48 | 3.3 | 0.005 | 0.71 | 0.0 | 0.04 | 16.79 | 0.00 | 2.229 | 10.53 | 0.10 | 3.6 | 96.4 | 0.0 | -0.30 | 0.63 | 0.63 | 0.86 | 1.77 | 9677 | 1171 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6XWP | 10634 | 2023-12-09 | 2020-01-24 | 3.38 | 3.76 | — | 3.7 | 0.007 | 0.72 | 0.0 | 0.04 | 12.99 | 0.01 | 2.107 | 10.70 | 0.00 | 6.1 | 93.9 | 0.0 | -3.13 | 0.70 | 0.84 | 1.88 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 14.96 | 0.01 | 2.203 | 10.70 | 0.60 | 3.9 | 96.1 | 0.0 | 1.13 | 0.45 | 0.71 | 0.85 | 1.10 | 9552 | 1280 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MZC | 9298 | 2023-12-12 | 2018-11-05 | 4.5 | 4.36 | 4.48 | 4.3 | 0.010 | 1.33 | 1.0 | 0.07 | 10.66 | 0.01 | 2.207 | 12.14 | 0.72 | 14.4 | 85.4 | 0.2 | -4.53 | 0.75 | 0.74 | — | 4.3 | 0.004 | 0.91 | 0.0 | 0.05 | 12.69 | 0.01 | 2.046 | 22.15 | 0.00 | 11.9 | 88.1 | 0.0 | -1.78 | 1.11 | 0.74 | 0.73 | — | 21254 | 2493 | 10 | 0 | 346 | 0 | 0 | logfile |
✔ | 6P07 | 20226 | 2023-12-10 | 2019-05-16 | 3.2 | 3.73 | 3.35 | 3.7 | 0.008 | 1.09 | 0.0 | 0.05 | 10.82 | 0.01 | 1.998 | 3.65 | 0.00 | 6.1 | 93.9 | 0.0 | -3.52 | 0.74 | 0.79 | 3.57 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.85 | 0.00 | 1.949 | 8.27 | 0.13 | 4.8 | 95.2 | 0.0 | 0.37 | 1.75 | 0.75 | 0.82 | 2.08 | 14072 | 1795 | 13 | 0 | 13 | 0 | 0 | logfile |
✔ | 7UQX | 26701 | 2023-12-09 | 2022-04-20 | 3.3 | 2.35 | 3.18 | 2.0 | 0.003 | 0.52 | 0.0 | 0.04 | 10.23 | 0.00 | 1.752 | 9.27 | 0.19 | 3.3 | 96.7 | 0.0 | 0.26 | 0.74 | 0.71 | 2.97 | 1.9 | 0.004 | 0.65 | 0.0 | 0.04 | 14.01 | 0.00 | 2.048 | 13.21 | 0.39 | 4.6 | 95.4 | 0.0 | -0.15 | 0.95 | 0.75 | 0.75 | 2.91 | 9491 | 1154 | 5 | 2 | 5 | 0 | 0 | logfile |
✔ | 7SCH | 25035 | 2023-12-09 | 2021-09-28 | 3.1 | 2.24 | 3.07 | 2.0 | 0.003 | 0.62 | 0.0 | 0.05 | 11.90 | 0.00 | 2.218 | 9.09 | 0.19 | 4.1 | 95.9 | 0.0 | 0.02 | 0.78 | 0.75 | 3.40 | 2.0 | 0.003 | 0.60 | 0.0 | 0.04 | 15.40 | 0.00 | 2.124 | 10.13 | 0.75 | 4.8 | 95.2 | 0.0 | 0.52 | 0.41 | 0.78 | 0.80 | 2.71 | 9711 | 1190 | 3 | 0 | 3 | 0 | 0 | logfile |