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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8oLG | 16957 | 2023-12-07 | 2023-03-30 | 4.2 | 3.16 | 3.54 | 4.2 | 0.002 | 0.41 | 0.0 | 0.05 | 9.55 | 0.00 | 2.261 | 9.57 | 0.00 | 13.5 | 86.5 | 0.0 | -4.82 | 0.25 | 0.63 | — | 4.2 | 0.005 | 0.94 | 0.0 | 0.05 | 15.65 | 0.00 | 2.280 | 21.54 | 0.00 | 18.4 | 81.6 | 0.0 | -4.39 | 2.15 | 0.29 | 0.65 | — | 1490 | 195 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BL7 | 16102 | 2023-12-08 | 2022-11-09 | 4.4 | 4.06 | 4.17 | 3.8 | 0.004 | 0.78 | 0.0 | 0.05 | 13.65 | 0.00 | 2.270 | 7.33 | 0.00 | 1.5 | 98.5 | 0.0 | -0.37 | 0.83 | 0.78 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 13.16 | 0.00 | 2.185 | 14.23 | 0.00 | 1.5 | 98.5 | 0.0 | 1.24 | 0.32 | 0.84 | 0.78 | — | 54474 | 7350 | 28 | 0 | 14 | 0 | 0 | logfile |
✔ | 8Q92 | 18268 | 2023-12-07 | 2023-08-19 | 3.05 | 2.89 | 2.63 | 3.1 | 0.008 | 1.37 | 0.0 | 0.09 | 13.95 | 0.01 | 2.531 | 0.94 | 1.23 | 8.7 | 91.3 | 0.0 | -3.17 | 0.37 | 0.86 | 4.77 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 15.50 | 0.00 | 2.365 | 4.68 | 0.00 | 6.5 | 93.5 | 0.0 | -2.80 | 0.27 | 0.32 | 0.84 | 3.34 | 2091 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QCP | 18331 | 2023-12-08 | 2023-08-28 | 3.21 | 3.22 | 3.18 | 3.3 | 0.011 | 1.86 | 1.0 | 0.09 | 11.52 | 0.01 | 2.543 | 0.00 | 0.00 | 7.5 | 92.5 | 0.0 | -2.03 | 0.31 | 0.78 | 5.53 | 3.3 | 0.004 | 0.62 | 0.0 | 0.05 | 16.11 | 0.00 | 2.194 | 2.43 | 0.00 | 4.1 | 95.9 | 0.0 | -2.16 | 2.98 | 0.34 | 0.86 | 5.67 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |
✔ | 8HCo | 34660 | 2023-12-08 | 2022-11-02 | 4.1 | 3.86 | 3.97 | 4.0 | 0.007 | 0.97 | 0.0 | 0.06 | 15.44 | 0.01 | 2.290 | 6.53 | 10.99 | 2.4 | 97.6 | 0.0 | -2.36 | 0.52 | 0.65 | — | 3.9 | 0.005 | 0.75 | 0.0 | 0.05 | 13.64 | 0.00 | 2.143 | 17.47 | 0.00 | 4.1 | 95.9 | 0.0 | -0.04 | 0.88 | 0.59 | 0.77 | — | 9330 | 1194 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7ZoX | 14849 | 2023-12-08 | 2022-04-26 | 4.4 | 3.95 | 4.37 | 3.8 | 0.005 | 0.72 | 0.0 | 0.04 | 15.62 | 0.00 | 2.219 | 17.13 | 0.14 | 7.7 | 92.3 | 0.0 | -4.40 | 0.84 | 0.80 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 14.93 | 0.00 | 2.225 | 12.46 | 0.00 | 5.0 | 95.0 | 0.0 | -0.48 | 0.73 | 0.84 | 0.79 | — | 6772 | 852 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oo9 | 17007 | 2023-12-07 | 2023-04-04 | 3.2 | 2.32 | 3.17 | 3.1 | 0.010 | 1.70 | 0.0 | 0.06 | 20.61 | 0.01 | 1.879 | 4.84 | 0.00 | 2.3 | 97.7 | 0.0 | -2.21 | 0.81 | 0.78 | 3.72 | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 21.98 | 0.00 | 1.615 | 10.38 | 0.00 | 2.1 | 97.9 | 0.0 | -0.39 | 1.14 | 0.83 | 0.81 | 3.07 | 4516 | 439 | 4 | 42 | 3 | 0 | 0 | logfile |
✔ | 8GPG | 34192 | 2023-12-10 | 2022-08-26 | 4.1 | 4.40 | 4.13 | 4.3 | 0.005 | 0.76 | 0.0 | 0.05 | 14.65 | 0.00 | 2.130 | 13.46 | 0.00 | 6.5 | 93.5 | 0.0 | -1.43 | 0.72 | 0.77 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.05 | 14.01 | 0.00 | 2.151 | 12.82 | 0.00 | 6.3 | 93.7 | 0.0 | -1.30 | 0.38 | 0.72 | 0.78 | — | 15864 | 1920 | 21 | 0 | 48 | 0 | 0 | logfile |
✔ | 7TCN | 25814 | 2023-12-13 | 2021-12-27 | 4.1 | 4.79 | — | 4.1 | 0.005 | 0.84 | 0.0 | 0.05 | 12.68 | 0.01 | 2.037 | 4.00 | 0.12 | 6.1 | 93.9 | 0.0 | -1.35 | 0.84 | 0.79 | — | 4.1 | 0.005 | 0.73 | 0.0 | 0.05 | 13.34 | 0.00 | 2.051 | 12.04 | 0.00 | 8.2 | 91.8 | 0.0 | -1.52 | 1.68 | 0.86 | 0.85 | — | 23747 | 2961 | 29 | 0 | 50 | 0 | 0 | logfile |
✔ | 8oi6 | 16887 | 2023-12-09 | 2023-03-22 | 3.59 | 3.91 | 3.62 | 3.8 | 0.005 | 0.64 | 0.0 | 0.04 | 16.91 | 0.00 | 1.310 | 7.71 | 0.24 | 1.8 | 98.1 | 0.1 | 0.35 | 0.77 | 0.84 | 1.96 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 16.43 | 0.00 | 1.949 | 8.41 | 0.00 | 2.3 | 97.6 | 0.1 | 0.59 | 0.36 | 0.77 | 0.84 | 1.68 | 11573 | 1464 | 11 | 0 | 11 | 0 | 0 | logfile |
✔ | 7YNG | 33961 | 2023-12-07 | 2022-07-30 | 3.1 | 3.08 | 2.33 | 3.4 | 0.009 | 0.85 | 0.0 | 0.06 | 13.71 | 0.00 | 2.192 | 9.66 | 0.00 | 10.4 | 89.6 | 0.0 | -4.25 | 0.36 | 0.76 | 3.68 | 3.4 | 0.002 | 0.51 | 0.0 | 0.05 | 14.89 | 0.00 | 2.286 | 6.32 | 0.00 | 4.9 | 95.1 | 0.0 | -1.98 | 0.36 | 0.34 | 0.74 | 3.39 | 2628 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i3Q | 35154 | 2023-12-08 | 2023-01-17 | 3.1 | 3.03 | 2.94 | 3.1 | 0.005 | 0.83 | 0.0 | 0.05 | 21.89 | 0.02 | 1.762 | 14.07 | 5.39 | 7.2 | 92.8 | 0.0 | 0.08 | 0.79 | 0.76 | 3.10 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 21.49 | 0.00 | 2.251 | 8.53 | 0.00 | 6.0 | 94.0 | 0.0 | 1.39 | 2.00 | 0.80 | 0.80 | 2.13 | 6998 | 595 | 3 | 95 | 1 | 0 | 0 | logfile |
✔ | 8PD2 | 17598 | 2023-12-08 | 2023-06-11 | 3.25 | 2.29 | 3.19 | 2.1 | 0.004 | 0.52 | 0.0 | 0.04 | 12.99 | 0.00 | 2.322 | 3.02 | 0.00 | 1.4 | 98.6 | 0.0 | 0.72 | 0.62 | 0.78 | 3.03 | 2.1 | 0.003 | 0.59 | 0.0 | 0.04 | 16.28 | 0.00 | 2.276 | 5.63 | 0.00 | 1.3 | 98.7 | 0.0 | 2.44 | 1.29 | 0.68 | 0.82 | 2.36 | 8270 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YR4 | 34045 | 2023-12-08 | 2022-08-08 | 4.12 | 4.78 | 5.11 | 4.9 | 0.008 | 1.16 | 0.0 | 0.05 | 14.91 | 0.01 | 2.224 | 7.76 | 0.00 | 6.4 | 93.6 | 0.0 | -1.79 | 0.56 | 0.53 | — | 4.8 | 0.003 | 0.80 | 0.0 | 0.05 | 14.63 | 0.00 | 2.133 | 22.64 | 0.00 | 7.4 | 92.6 | 0.0 | -0.66 | 3.47 | 0.63 | 0.76 | — | 6394 | 787 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GMR | 40231 | 2023-12-10 | 2023-03-27 | 3.76 | 4.01 | 3.82 | 4.0 | 0.006 | 1.18 | 0.0 | 0.04 | 17.02 | 0.01 | 1.574 | 20.59 | 0.00 | 12.6 | 87.0 | 0.5 | -5.54 | 0.62 | 0.81 | 3.92 | 4.0 | 0.003 | 0.88 | 0.0 | 0.04 | 17.31 | 0.01 | 2.237 | 5.77 | 0.00 | 11.5 | 88.5 | 0.0 | -1.35 | 0.49 | 0.61 | 0.81 | 1.61 | 12472 | 1712 | 16 | 0 | 8 | 0 | 0 | logfile |
✔ | 8K5C | 36901 | 2023-12-07 | 2023-07-21 | 3.13 | 3.33 | 3.05 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 17.07 | 0.01 | 2.341 | 8.34 | 0.78 | 4.2 | 95.8 | 0.0 | 0.59 | 0.50 | 0.78 | 1.82 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 16.94 | 0.01 | 2.330 | 8.13 | 0.00 | 5.2 | 94.8 | 0.0 | 0.67 | 1.78 | 0.50 | 0.78 | 2.10 | 2380 | 291 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8TJ3 | 41299 | 2023-12-10 | 2023-07-20 | 3.2 | 3.62 | — | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 13.85 | 0.02 | 2.416 | 10.13 | 1.16 | 7.4 | 92.4 | 0.1 | 0.15 | 0.73 | 0.58 | 0.54 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.49 | 0.00 | 1.956 | 16.53 | 0.00 | 8.0 | 92.0 | 0.0 | 0.48 | 1.88 | 0.79 | 0.76 | 1.68 | 13127 | 833 | 2 | 0 | 0 | 0 | 6652 | logfile |
✔ | 8BLD | 16107 | 2023-12-08 | 2022-11-09 | 4.4 | 4.20 | 4.38 | 3.9 | 0.004 | 0.77 | 0.0 | 0.05 | 13.60 | 0.00 | 2.174 | 12.39 | 0.00 | 1.8 | 98.2 | 0.0 | 0.34 | 0.83 | 0.77 | — | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 13.06 | 0.00 | 2.135 | 14.44 | 0.00 | 2.1 | 97.9 | 0.0 | 0.94 | 1.04 | 0.84 | 0.78 | — | 54376 | 7343 | 28 | 0 | 14 | 0 | 0 | logfile |
✔ | 8E05 | 27817 | 2023-12-14 | 2022-08-08 | 4.6 | 4.86 | 5.04 | 4.7 | 0.004 | 0.73 | 1.0 | 0.05 | 11.91 | 0.01 | 2.169 | 3.78 | 0.00 | 3.6 | 96.4 | 0.0 | -0.27 | 0.79 | 0.71 | — | 4.7 | 0.002 | 0.66 | 0.0 | 0.04 | 12.67 | 0.00 | 2.094 | 13.30 | 0.00 | 5.1 | 94.9 | 0.0 | -1.04 | 0.79 | 0.80 | 0.75 | — | 27730 | 3498 | 4 | 2 | 0 | 0 | 0 | logfile |
✔ | 8JTD | 36641 | 2023-12-11 | 2023-06-21 | 4.9 | 4.51 | 4.64 | 4.6 | 0.005 | 0.93 | 0.0 | 0.07 | 14.17 | 0.00 | 2.048 | 20.29 | 0.00 | 3.8 | 96.1 | 0.1 | -0.29 | 0.63 | 0.55 | — | 4.6 | 0.003 | 0.83 | 0.0 | 0.05 | 12.88 | 0.00 | 2.068 | 21.12 | 0.00 | 5.3 | 94.7 | 0.0 | -0.71 | 0.68 | 0.67 | 0.64 | — | 17275 | 1978 | 51 | 0 | 128 | 0 | 0 | logfile |