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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5VLZ | 8709 | 2023-12-16 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.002 | 0.73 | 0.0 | 0.00 | 4.75 | 0.00 | 2.276 | 0.95 | 0.00 | 4.8 | 95.2 | 0.0 | -0.40 | 2.02 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BPE | 16150 | 2023-12-13 | 2022-11-16 | 3.63 | 3.94 | 3.36 | 3.4 | 0.009 | 1.07 | 0.0 | 0.08 | 13.16 | 0.01 | 2.283 | 5.43 | 0.00 | 8.6 | 91.4 | 0.0 | -1.45 | 0.82 | 0.70 | 1.61 | 3.4 | 0.004 | 0.75 | 0.0 | 0.05 | 15.33 | 0.00 | 2.112 | 13.19 | 0.44 | 7.4 | 92.5 | 0.1 | -0.99 | 1.04 | 0.89 | 0.81 | 1.70 | 24195 | 3104 | 30 | 0 | 14 | 0 | 0 | logfile |
✔ | 8ooC | 17010 | 2023-12-14 | 2023-04-05 | 2.93 | 1.92 | 3.02 | 2.8 | 0.003 | 0.70 | 0.0 | 0.05 | 14.06 | 0.01 | 2.069 | 2.47 | 0.00 | 2.3 | 97.7 | 0.0 | -1.01 | 0.87 | 0.85 | 3.73 | 2.8 | 0.003 | 0.65 | 0.0 | 0.04 | 16.89 | 0.00 | 2.002 | 8.28 | 1.69 | 1.9 | 98.1 | 0.0 | 0.70 | 2.00 | 0.89 | 0.86 | 3.02 | 28371 | 3626 | 17 | 0 | 8 | 0 | 0 | logfile |
✔ | 8GXW | 34363 | 2023-12-14 | 2022-09-21 | 2.7 | 2.30 | 2.77 | 2.5 | 0.006 | 0.55 | 0.0 | 0.04 | 14.20 | 0.00 | 1.843 | 5.14 | 0.00 | 2.4 | 97.6 | 0.0 | 0.98 | 0.66 | 0.81 | 3.89 | 2.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.47 | 0.00 | 1.964 | 7.43 | 2.21 | 1.6 | 98.3 | 0.0 | 0.94 | 1.11 | 0.71 | 0.84 | 3.63 | 29530 | 3788 | 15 | 0 | 4 | 0 | 0 | logfile |
✔ | 8AA3 | 15292 | 2023-12-13 | 2022-06-29 | 2.7 | 3.00 | 2.56 | 2.8 | 0.010 | 0.50 | 0.0 | 0.04 | 12.82 | 0.00 | 2.085 | 7.26 | 0.00 | 1.6 | 98.4 | 0.0 | 1.42 | 0.84 | 0.89 | 3.41 | 2.8 | 0.004 | 0.54 | 0.0 | 0.04 | 14.71 | 0.00 | 1.895 | 5.93 | 0.97 | 2.4 | 97.6 | 0.0 | 0.54 | 1.14 | 0.84 | 0.91 | 4.37 | 23634 | 2950 | 12 | 0 | 26 | 0 | 0 | logfile |
✔ | 7VQ3 | 32084 | 2023-12-08 | 2021-10-19 | 3.2 | 3.40 | — | 3.4 | 0.005 | 0.55 | 0.0 | 0.04 | 14.66 | 0.00 | 2.061 | 5.90 | 0.00 | 6.6 | 93.4 | 0.0 | -0.93 | 0.65 | 0.83 | 2.45 | 3.4 | 0.002 | 0.50 | 0.0 | 0.04 | 16.61 | 0.00 | 2.240 | 6.29 | 0.00 | 3.2 | 96.8 | 0.0 | 3.25 | 0.60 | 0.63 | 0.83 | 1.84 | 6306 | 800 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E0G | 8947 | 2023-12-10 | 2018-07-06 | 2.9 | 2.97 | — | 3.0 | 0.010 | 1.03 | 0.0 | 0.06 | 10.04 | 0.01 | 2.030 | 9.03 | 0.00 | 6.7 | 92.6 | 0.6 | -3.72 | 0.62 | 0.71 | 2.41 | 3.0 | 0.004 | 0.72 | 0.0 | 0.05 | 14.17 | 0.00 | 2.174 | 17.04 | 2.54 | 6.6 | 93.4 | 0.0 | -0.92 | 1.63 | 0.61 | 0.73 | 2.57 | 12910 | 1650 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TX7 | 26156 | 2023-12-07 | 2022-02-07 | 3.8 | 4.02 | 3.76 | 3.9 | 0.008 | 0.76 | 0.0 | 0.07 | 21.15 | 0.00 | 2.072 | 6.28 | 0.00 | 1.8 | 98.2 | 0.0 | 3.77 | 0.44 | 0.74 | 1.59 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.45 | 0.00 | 2.244 | 8.70 | 0.33 | 2.0 | 98.0 | 0.0 | 2.10 | 1.33 | 0.47 | 0.75 | 1.83 | 3203 | 397 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8GXU | 34362 | 2023-12-14 | 2022-09-21 | 2.5 | 2.02 | 2.54 | 2.3 | 0.007 | 0.57 | 0.0 | 0.05 | 14.57 | 0.01 | 1.855 | 4.64 | 0.00 | 3.2 | 96.8 | 0.0 | 0.82 | 0.64 | 0.79 | 4.52 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 17.40 | 0.00 | 2.149 | 6.29 | 1.46 | 1.8 | 98.2 | 0.0 | 1.13 | 1.37 | 0.71 | 0.83 | 4.00 | 29503 | 3788 | 15 | 0 | 3 | 0 | 0 | logfile |
✔ | 6XMG | 22258 | 2023-12-08 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 20.81 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.04 | 22.40 | 0.01 | 1.908 | 49.19 | 0.20 | 11.5 | 88.5 | 0.0 | -2.34 | 1.33 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 7NKN | 12444 | 2023-12-11 | 2021-02-18 | 2.71 | 2.61 | — | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 13.52 | 0.00 | 2.078 | 5.11 | 0.00 | 2.6 | 97.4 | 0.0 | 1.75 | 0.69 | 0.86 | 3.48 | 2.8 | 0.004 | 0.53 | 0.0 | 0.04 | 14.92 | 0.00 | 2.082 | 6.00 | 0.25 | 1.3 | 98.7 | 0.0 | 3.65 | 0.90 | 0.70 | 0.88 | 2.95 | 16846 | 1156 | 12 | 0 | 0 | 0 | 8457 | logfile |
✔ | 7BZY | 30263 | 2023-12-08 | 2020-04-29 | 3.7 | 5.07 | 3.67 | 2.9 | 0.005 | 1.03 | 0.0 | 0.05 | 7.60 | 0.00 | 2.175 | 11.89 | 0.00 | 15.0 | 84.6 | 0.3 | -5.26 | 0.62 | 0.47 | — | 3.4 | 0.003 | 0.82 | 0.0 | 0.05 | 6.08 | 0.00 | 2.106 | 13.54 | 0.00 | 14.3 | 85.7 | 0.0 | -3.30 | 1.23 | 0.85 | 0.74 | — | 6169 | 1260 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SUF | 10313 | 2023-12-07 | 2019-09-13 | 3.4 | 3.32 | — | 3.3 | 0.021 | 1.77 | 6.0 | 0.10 | 10.78 | 0.01 | 2.186 | 1.73 | 0.00 | 2.4 | 97.3 | 0.3 | -0.46 | 0.80 | 0.80 | 2.93 | 3.3 | 0.004 | 0.66 | 1.0 | 0.04 | 14.92 | 0.00 | 1.996 | 10.75 | 0.15 | 4.0 | 96.0 | 0.0 | 0.49 | 1.32 | 0.82 | 0.84 | 2.61 | 108112 | 13607 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iRS | 35684 | 2023-12-11 | 2023-03-19 | 3.0 | 3.29 | 3.10 | 3.3 | 0.013 | 1.86 | 8.0 | 0.10 | 12.74 | 0.02 | 2.555 | 0.63 | 0.00 | 4.5 | 95.5 | 0.0 | -1.14 | 0.58 | 0.72 | 3.45 | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 16.05 | 0.00 | 1.963 | 11.88 | 2.59 | 3.0 | 97.0 | 0.0 | 0.48 | 1.49 | 0.56 | 0.73 | 2.75 | 17510 | 1118 | 5 | 0 | 1 | 0 | 8717 | logfile |
✔ | 8J6R | 36012 | 2023-12-08 | 2023-04-26 | 2.76 | 2.15 | 2.84 | 2.0 | 0.004 | 0.62 | 0.0 | 0.06 | 13.55 | 0.01 | 2.116 | 6.13 | 0.00 | 2.6 | 97.4 | 0.0 | 0.52 | 0.76 | 0.75 | 3.17 | 2.0 | 0.005 | 0.59 | 0.0 | 0.04 | 16.15 | 0.00 | 2.154 | 8.18 | 1.61 | 3.3 | 96.7 | 0.0 | 0.54 | 0.34 | 0.78 | 0.79 | 3.28 | 9120 | 1151 | 6 | 0 | 2 | 1 | 0 | logfile |
✔ | 7E33 | 30975 | 2023-12-08 | 2021-02-07 | 2.9 | 3.20 | — | 3.2 | 0.004 | 0.45 | 0.0 | 0.04 | 12.84 | 0.00 | 1.918 | 6.58 | 0.00 | 1.2 | 98.8 | 0.0 | 2.41 | 0.63 | 0.74 | 2.39 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 16.19 | 0.00 | 2.114 | 10.63 | 1.71 | 2.8 | 97.2 | 0.0 | 1.09 | 1.57 | 0.63 | 0.78 | 2.88 | 8538 | 1086 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7KFZ | 22857 | 2023-12-08 | 2020-10-15 | 3.47 | 4.45 | 3.43 | 3.9 | 0.012 | 0.80 | 0.0 | 0.05 | 13.58 | 0.00 | 1.897 | 8.91 | 0.00 | 3.8 | 96.2 | 0.0 | -1.10 | 0.86 | 0.78 | 2.74 | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 14.11 | 0.00 | 1.917 | 7.99 | 0.14 | 1.5 | 98.5 | 0.0 | 2.56 | 0.52 | 0.93 | 0.87 | 2.58 | 6592 | 803 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 6R94 | 4768 | 2023-12-12 | 2019-04-02 | 3.5 | 2.44 | — | 3.6 | 0.012 | 1.01 | 1.0 | 0.07 | 26.30 | 0.01 | 2.114 | 1.78 | 0.00 | 3.0 | 96.6 | 0.4 | 0.29 | 0.74 | 0.70 | 2.23 | 3.6 | 0.005 | 0.65 | 1.0 | 0.05 | 26.54 | 0.00 | 1.980 | 4.86 | 0.00 | 3.8 | 96.2 | 0.0 | 2.10 | 1.03 | 0.76 | 0.72 | 1.67 | 22367 | 803 | 10 | 290 | 0 | 0 | 9995 | logfile |
✔ | 7UAG | 26425 | 2023-12-08 | 2022-03-12 | 3.5 | 3.78 | 3.45 | 3.9 | 0.004 | 0.66 | 0.0 | 0.05 | 13.11 | 0.01 | 2.247 | 17.66 | 0.00 | 6.5 | 93.4 | 0.1 | -1.43 | 0.65 | 0.67 | 1.75 | 3.8 | 0.005 | 0.70 | 0.0 | 0.05 | 15.39 | 0.01 | 2.060 | 17.86 | 0.37 | 6.8 | 93.2 | 0.0 | -1.47 | 0.40 | 0.67 | 0.68 | 1.33 | 7588 | 938 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oNi | 12995 | 2023-12-08 | 2021-05-25 | 3.4 | 3.65 | 3.17 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 14.04 | 0.00 | 1.323 | 7.13 | 0.00 | 4.2 | 95.8 | 0.0 | 0.82 | 0.87 | 0.85 | 2.39 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.85 | 0.00 | 2.221 | 7.18 | 0.45 | 4.5 | 95.5 | 0.0 | 1.20 | 0.39 | 0.88 | 0.87 | 2.13 | 8840 | 1141 | 6 | 0 | 7 | 0 | 0 | logfile |