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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6V0H | 20998 | 2023-12-11 | 2019-11-18 | 3.6 | 3.82 | — | 3.9 | 0.005 | 0.84 | 0.0 | 0.05 | 9.31 | 0.01 | 1.866 | 4.20 | 0.00 | 4.2 | 95.8 | 0.0 | -3.68 | 0.71 | 0.75 | 2.34 | 3.8 | 0.004 | 0.64 | 0.0 | 0.05 | 14.72 | 0.00 | 2.162 | 9.11 | 0.52 | 5.1 | 94.9 | 0.0 | -1.97 | 1.52 | 0.73 | 0.77 | 2.66 | 16602 | 2178 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V0i | 20999 | 2023-12-11 | 2019-11-18 | 3.43 | 3.14 | — | 3.1 | 0.007 | 1.18 | 0.0 | 0.07 | 10.96 | 0.01 | 2.274 | 4.28 | 0.00 | 1.4 | 98.6 | 0.0 | -2.32 | 0.77 | 0.82 | 2.98 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 14.99 | 0.00 | 2.261 | 10.06 | 0.46 | 3.5 | 96.5 | 0.0 | -1.29 | 0.84 | 0.80 | 0.87 | 2.98 | 15942 | 2106 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q5Z | 13847 | 2023-12-09 | 2021-11-05 | 3.25 | 3.74 | — | 3.3 | 0.005 | 1.00 | 1.0 | 0.06 | 12.76 | 0.01 | 1.750 | 5.22 | 0.09 | 6.2 | 93.6 | 0.2 | -2.07 | 0.80 | 0.69 | 1.18 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 14.12 | 0.00 | 2.169 | 16.53 | 0.43 | 6.5 | 93.4 | 0.2 | -0.80 | 1.18 | 0.82 | 0.74 | 1.50 | 10489 | 1344 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2023-12-11 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.015 | 1.82 | 0.0 | 0.10 | 11.58 | 0.01 | 1.763 | 12.56 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.004 | 0.86 | 0.0 | 0.05 | 13.45 | 0.00 | 2.104 | 21.10 | 0.00 | 8.5 | 91.1 | 0.4 | -1.41 | 1.07 | 0.80 | 0.81 | — | 19278 | 2409 | 33 | 0 | 45 | 0 | 0 | logfile |
✔ | 7RYP | 24744 | 2023-12-09 | 2021-08-25 | 4.8 | 5.38 | 4.84 | 6.5 | 0.015 | 1.50 | 0.0 | 0.07 | 10.94 | 0.01 | 2.098 | 4.80 | 0.00 | 6.2 | 92.1 | 1.7 | -1.44 | 0.78 | 0.73 | — | 6.5 | 0.004 | 0.72 | 0.0 | 0.04 | 13.13 | 0.01 | 2.000 | 20.19 | 0.00 | 13.3 | 86.4 | 0.3 | -1.66 | 0.97 | 0.78 | 0.73 | — | 11293 | 725 | 2 | 0 | 0 | 0 | 5599 | logfile |
✔ | 7T2E | 25611 | 2023-12-07 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EPA | 28523 | 2023-12-07 | 2022-10-05 | 3.4 | 4.08 | 3.33 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 15.76 | 0.00 | 2.184 | 14.18 | 0.18 | 9.3 | 90.4 | 0.3 | -2.16 | 0.75 | 0.75 | 1.53 | 3.8 | 0.005 | 0.84 | 0.0 | 0.05 | 15.99 | 0.01 | 2.138 | 19.15 | 0.18 | 11.0 | 88.5 | 0.5 | -2.33 | 0.94 | 0.76 | 0.78 | 1.23 | 5045 | 637 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6o0Y | 0584 | 2023-12-09 | 2019-02-17 | 3.37 | 4.01 | — | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 18.81 | 0.01 | 2.272 | 2.52 | 0.37 | 5.5 | 94.5 | 0.0 | -4.11 | 0.85 | 0.88 | 2.93 | 3.7 | 0.008 | 0.70 | 0.0 | 0.04 | 18.97 | 0.00 | 2.032 | 7.57 | 0.12 | 6.4 | 93.6 | 0.0 | -0.53 | 0.31 | 0.85 | 0.89 | 2.63 | 11828 | 1146 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 8DZG | 27797 | 2023-12-12 | 2022-08-07 | 3.1 | 3.44 | 3.21 | 3.5 | 0.008 | 0.73 | 0.0 | 0.04 | 16.80 | 0.00 | 2.076 | 2.92 | 0.29 | 4.8 | 95.0 | 0.2 | -0.15 | 0.67 | 0.79 | 3.03 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 16.55 | 0.00 | 2.162 | 4.64 | 0.14 | 5.8 | 93.8 | 0.4 | 0.73 | 1.13 | 0.69 | 0.83 | 3.44 | 19758 | 2520 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8EQ4 | 28535 | 2023-12-08 | 2022-10-07 | 2.71 | 3.56 | 2.72 | 3.3 | 0.006 | 0.74 | 0.0 | 0.05 | 16.44 | 0.02 | 2.233 | 7.56 | 0.00 | 1.1 | 98.9 | 0.0 | 1.28 | 0.68 | 0.87 | 4.24 | 3.3 | 0.003 | 0.61 | 0.0 | 0.05 | 14.24 | 0.00 | 2.261 | 7.85 | 1.30 | 1.8 | 98.2 | 0.0 | 1.40 | 1.29 | 0.67 | 0.86 | 4.10 | 6903 | 849 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 7T57 | 25697 | 2023-12-09 | 2021-12-11 | 3.7 | 4.28 | 3.83 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.11 | 0.00 | 1.826 | 9.53 | 0.72 | 2.7 | 97.1 | 0.1 | 0.90 | 0.72 | 0.74 | 0.99 | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 15.90 | 0.00 | 1.935 | 11.33 | 0.16 | 2.7 | 97.3 | 0.0 | 1.15 | 0.86 | 0.73 | 0.80 | 1.00 | 11460 | 1464 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7NHo | 12335 | 2023-12-12 | 2021-02-11 | 2.66 | 3.46 | — | 3.3 | 0.014 | 2.16 | 1.0 | 0.44 | 18.46 | 0.02 | 1.974 | 2.75 | 1.77 | 5.4 | 94.4 | 0.1 | -2.33 | 0.58 | 0.79 | 3.76 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 17.47 | 0.00 | 1.864 | 9.31 | 2.54 | 3.0 | 97.0 | 0.0 | 1.08 | 1.70 | 0.63 | 0.85 | 3.15 | 19800 | 2086 | 26 | 0 | 62 | 0 | 0 | logfile |
✔ | 7V6Y | 31753 | 2023-12-08 | 2021-08-20 | 3.5 | 3.75 | — | 3.8 | 0.014 | 1.83 | 9.0 | 0.13 | 16.37 | 0.01 | 2.258 | 12.19 | 11.06 | 5.3 | 94.5 | 0.2 | 0.59 | 0.59 | 0.74 | 1.29 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.66 | 0.01 | 2.102 | 9.33 | 0.57 | 5.0 | 95.0 | 0.0 | 0.69 | 1.23 | 0.63 | 0.76 | 1.86 | 7484 | 990 | 3 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2023-12-07 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.90 | 1.0 | 0.07 | 19.16 | 0.01 | 2.284 | 6.72 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.004 | 1.12 | 0.0 | 0.04 | 20.40 | 0.00 | 2.242 | 13.44 | 2.67 | 7.5 | 92.5 | 0.0 | -1.69 | 0.95 | 0.21 | 0.65 | 0.67 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 7T56 | 25696 | 2023-12-09 | 2021-12-11 | 3.7 | 4.23 | 3.77 | 4.1 | 0.004 | 0.68 | 0.0 | 0.05 | 13.82 | 0.00 | 1.719 | 9.32 | 0.72 | 3.3 | 96.6 | 0.1 | 0.18 | 0.72 | 0.76 | 1.54 | 4.1 | 0.004 | 0.72 | 0.0 | 0.04 | 16.60 | 0.00 | 1.885 | 12.75 | 0.40 | 3.4 | 96.6 | 0.0 | 1.01 | 1.33 | 0.73 | 0.81 | 1.50 | 11460 | 1464 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SQS | 25392 | 2023-12-07 | 2021-11-06 | 3.1 | 3.86 | 2.91 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 13.61 | 0.00 | 2.317 | 3.59 | 0.22 | 2.9 | 97.1 | 0.0 | 1.01 | 0.76 | 0.84 | 2.45 | 3.6 | 0.004 | 0.57 | 0.0 | 0.04 | 14.95 | 0.00 | 2.243 | 4.28 | 0.00 | 4.6 | 95.4 | 0.0 | 0.93 | 0.32 | 0.77 | 0.86 | 2.75 | 4376 | 560 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DK3 | 27482 | 2023-12-08 | 2022-07-01 | 3.28 | 4.10 | 3.38 | 3.6 | 0.006 | 0.58 | 0.0 | 0.04 | 16.40 | 0.00 | 1.869 | 3.66 | 0.85 | 6.8 | 93.2 | 0.0 | -0.13 | 0.85 | 0.87 | 2.42 | 3.6 | 0.005 | 0.61 | 0.0 | 0.04 | 17.60 | 0.00 | 1.875 | 3.77 | 0.00 | 6.1 | 93.8 | 0.1 | -0.03 | 0.40 | 0.86 | 0.88 | 2.01 | 8905 | 999 | 7 | 52 | 4 | 0 | 0 | logfile |
✔ | 7N77 | 24222 | 2023-12-08 | 2021-06-09 | 3.2 | 4.05 | 3.31 | 3.7 | 0.006 | 1.31 | 0.0 | 0.06 | 13.19 | 0.01 | 1.692 | 9.63 | 0.14 | 3.5 | 96.5 | 0.0 | -1.56 | 0.64 | 0.74 | 1.92 | 3.7 | 0.002 | 0.89 | 0.0 | 0.04 | 13.61 | 0.00 | 2.060 | 5.67 | 0.28 | 2.0 | 98.0 | 0.0 | 2.14 | 1.63 | 0.68 | 0.82 | 1.06 | 7470 | 1036 | 1 | 0 | 4 | 2 | 0 | logfile |
✔ | 6RLD | 4919 | 2023-12-10 | 2019-05-02 | 2.9 | 3.28 | 2.83 | 3.2 | 0.009 | 1.38 | 0.0 | 0.06 | 18.76 | 0.01 | 2.306 | 5.79 | 0.47 | 4.6 | 95.4 | 0.0 | -3.38 | 0.74 | 0.82 | 3.94 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 17.21 | 0.00 | 2.182 | 8.08 | 1.59 | 2.5 | 97.5 | 0.0 | 1.74 | 0.72 | 0.76 | 0.85 | 2.80 | 15309 | 1855 | 14 | 0 | 21 | 0 | 0 | logfile |
✔ | 7MDM | 23775 | 2023-12-15 | 2021-04-05 | 4.86 | 5.09 | — | 5.0 | 0.005 | 1.19 | 0.0 | 0.07 | 15.37 | 0.01 | 2.261 | 9.38 | 0.03 | 7.9 | 92.1 | 0.0 | -3.53 | 0.82 | 0.77 | — | 4.9 | 0.004 | 0.87 | 0.0 | 0.05 | 14.45 | 0.01 | 2.097 | 32.97 | 0.00 | 8.9 | 91.1 | 0.0 | -2.05 | 2.41 | 0.84 | 0.79 | — | 31986 | 4051 | 12 | 0 | 6 | 0 | 0 | logfile |