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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NG5 | 12308 | 2023-12-13 | 2021-02-08 | 3.8 | 4.19 | 3.88 | 4.0 | 0.013 | 1.31 | 0.0 | 0.07 | 13.78 | 0.01 | 1.977 | 5.18 | 0.15 | 7.6 | 92.4 | 0.0 | -2.18 | 0.79 | 0.80 | 1.59 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 14.39 | 0.00 | 1.736 | 9.16 | 0.00 | 5.8 | 94.2 | 0.0 | -0.59 | 0.90 | 0.79 | 0.80 | 1.30 | 74579 | 4656 | 13 | 0 | 22 | 0 | 37485 | logfile |
✘ | 6VL6 | 21231 | 2023-08-16 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZLJ | 14782 | 2023-11-14 | 2022-04-15 | 3.63 | 3.90 | 3.68 | 3.8 | 0.005 | 1.15 | 0.0 | 0.04 | 14.37 | 0.01 | 2.033 | 32.13 | 0.00 | 4.8 | 95.1 | 0.1 | 0.10 | 0.69 | 0.80 | 1.94 | 3.8 | 0.007 | 0.85 | 0.0 | 0.05 | 15.52 | 0.00 | 2.150 | 9.78 | 0.09 | 6.5 | 93.4 | 0.1 | -0.01 | 1.00 | 0.68 | 0.78 | 1.67 | 9659 | 1226 | 7 | 0 | 1 | 10 | 0 | logfile |
✔ | 7TFD | 25870 | 2023-07-18 | 2022-01-06 | 3.16 | 3.43 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 13.90 | 0.00 | 2.024 | 14.29 | 0.56 | 5.0 | 95.0 | 0.0 | -0.05 | 0.57 | 0.64 | 2.52 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.24 | 0.00 | 2.011 | 13.43 | 0.33 | 5.8 | 94.2 | 0.0 | -0.40 | 1.06 | 0.66 | 0.71 | 2.14 | 41408 | 5292 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7ZLJ | 14782 | 2023-09-29 | 2022-04-15 | 3.63 | 3.90 | 3.68 | 3.8 | 0.005 | 1.15 | 0.0 | 0.04 | 13.96 | 0.01 | 2.033 | 32.13 | 0.00 | 4.8 | 95.1 | 0.1 | 0.10 | 0.69 | 0.80 | 1.94 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 15.28 | 0.00 | 2.208 | 8.95 | 0.19 | 6.1 | 93.8 | 0.1 | 0.38 | 1.52 | 0.68 | 0.77 | 1.71 | 9659 | 1226 | 7 | 0 | 1 | 10 | 0 | logfile |
✔ | 7U9Q | 26405 | 2024-03-18 | 2022-03-11 | 3.11 | 3.51 | — | 1.9 | 0.003 | 0.85 | 0.0 | 0.04 | 14.30 | 0.01 | 2.065 | 12.40 | 0.66 | 3.4 | 96.5 | 0.1 | -1.28 | 0.86 | 0.79 | 2.19 | 1.9 | 0.003 | 0.68 | 0.0 | 0.04 | 14.83 | 0.00 | 2.124 | 11.34 | 0.53 | 3.5 | 96.4 | 0.1 | 0.84 | 0.46 | 0.88 | 0.86 | 2.50 | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7ZLJ | 14782 | 2023-12-09 | 2022-04-15 | 3.63 | 3.90 | 3.68 | 3.8 | 0.005 | 1.15 | 0.0 | 0.04 | 14.37 | 0.01 | 2.033 | 32.13 | 0.00 | 4.8 | 95.1 | 0.1 | 0.10 | 0.69 | 0.80 | 1.94 | 3.8 | 0.007 | 0.85 | 0.0 | 0.05 | 15.52 | 0.00 | 2.150 | 9.78 | 0.09 | 6.5 | 93.4 | 0.1 | -0.01 | 1.00 | 0.68 | 0.78 | 1.67 | 9659 | 1226 | 7 | 0 | 1 | 10 | 0 | logfile |
✔ | 7TFD | 25870 | 2024-02-24 | 2022-01-06 | 3.16 | 3.43 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 13.90 | 0.00 | 2.024 | 14.29 | 0.56 | 5.0 | 95.0 | 0.0 | -0.05 | 0.57 | 0.64 | 2.52 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 16.03 | 0.00 | 2.009 | 12.88 | 1.75 | 5.2 | 94.8 | 0.0 | -0.28 | 1.02 | 0.67 | 0.71 | 1.91 | 41408 | 5292 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7NG5 | 12308 | 2024-02-18 | 2021-02-08 | 3.8 | 4.19 | 3.88 | 4.0 | 0.013 | 1.31 | 0.0 | 0.07 | 13.78 | 0.01 | 1.977 | 5.18 | 0.15 | 7.6 | 92.4 | 0.0 | -2.18 | 0.79 | 0.80 | 1.59 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.32 | 0.00 | 1.760 | 8.41 | 0.32 | 4.6 | 95.4 | 0.0 | -0.37 | 0.90 | 0.79 | 0.80 | 1.21 | 74579 | 4656 | 13 | 0 | 22 | 0 | 37485 | logfile |
✔ | 7TFD | 25870 | 2024-03-24 | 2022-01-06 | 3.16 | 3.43 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 13.90 | 0.00 | 2.024 | 14.29 | 0.56 | 5.0 | 95.0 | 0.0 | -0.05 | 0.57 | 0.64 | 2.52 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 16.03 | 0.00 | 2.009 | 12.88 | 1.75 | 5.2 | 94.8 | 0.0 | -0.28 | 1.02 | 0.67 | 0.71 | 1.91 | 41408 | 5292 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7NG5 | 12308 | 2024-03-16 | 2021-02-08 | 3.8 | 4.19 | 3.88 | 4.0 | 0.013 | 1.31 | 0.0 | 0.07 | 13.78 | 0.01 | 1.977 | 5.18 | 0.15 | 7.6 | 92.4 | 0.0 | -2.18 | 0.79 | 0.80 | 1.59 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.32 | 0.00 | 1.760 | 8.41 | 0.32 | 4.6 | 95.4 | 0.0 | -0.37 | 0.90 | 0.79 | 0.80 | 1.21 | 74579 | 4656 | 13 | 0 | 22 | 0 | 37485 | logfile |
✔ | 7ZLJ | 14782 | 2023-10-04 | 2022-04-15 | 3.63 | 3.90 | 3.68 | 3.8 | 0.005 | 1.15 | 0.0 | 0.04 | 13.96 | 0.01 | 2.033 | 32.13 | 0.00 | 4.8 | 95.1 | 0.1 | 0.10 | 0.69 | 0.80 | 1.94 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 15.28 | 0.00 | 2.208 | 8.95 | 0.19 | 6.1 | 93.8 | 0.1 | 0.38 | 1.52 | 0.68 | 0.77 | 1.71 | 9659 | 1226 | 7 | 0 | 1 | 10 | 0 | logfile |
✔ | 7NG5 | 12308 | 2023-06-23 | 2021-02-08 | 3.8 | 4.19 | 3.88 | 4.0 | 0.013 | 1.31 | 0.0 | 0.07 | 13.35 | 0.01 | 1.977 | 5.18 | 0.15 | 7.6 | 92.4 | 0.0 | -2.18 | 0.79 | 0.80 | 1.59 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 14.15 | 0.00 | 1.730 | 8.85 | 0.05 | 5.2 | 94.8 | 0.0 | -0.52 | 0.90 | 0.79 | 0.80 | 1.25 | 74579 | 4656 | 13 | 0 | 22 | 0 | 37485 | logfile |
✔ | 7TFD | 25870 | 2023-08-25 | 2022-01-06 | 3.16 | 3.43 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 13.90 | 0.00 | 2.024 | 14.29 | 0.56 | 5.0 | 95.0 | 0.0 | -0.05 | 0.57 | 0.64 | 2.52 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.24 | 0.00 | 2.011 | 13.43 | 0.33 | 5.8 | 94.2 | 0.0 | -0.40 | 1.06 | 0.66 | 0.71 | 2.14 | 41408 | 5292 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7NG5 | 12308 | 2023-07-12 | 2021-02-08 | 3.8 | 4.19 | 3.88 | 4.0 | 0.013 | 1.31 | 0.0 | 0.07 | 13.35 | 0.01 | 1.977 | 5.18 | 0.15 | 7.6 | 92.4 | 0.0 | -2.18 | 0.79 | 0.80 | 1.59 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 14.15 | 0.00 | 1.730 | 8.85 | 0.05 | 5.2 | 94.8 | 0.0 | -0.52 | 0.90 | 0.79 | 0.80 | 1.25 | 74579 | 4656 | 13 | 0 | 22 | 0 | 37485 | logfile |
✔ | 7ZLJ | 14782 | 2023-08-11 | 2022-04-15 | 3.63 | 3.90 | 3.68 | 3.8 | 0.005 | 1.15 | 0.0 | 0.04 | 13.96 | 0.01 | 2.033 | 32.13 | 0.00 | 4.8 | 95.1 | 0.1 | 0.10 | 0.69 | 0.80 | 1.94 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 15.28 | 0.00 | 2.208 | 8.95 | 0.19 | 6.1 | 93.8 | 0.1 | 0.38 | 1.52 | 0.68 | 0.77 | 1.71 | 9659 | 1226 | 7 | 0 | 1 | 10 | 0 | logfile |
✔ | 7NG5 | 12308 | 2023-08-18 | 2021-02-08 | 3.8 | 4.19 | 3.88 | 4.0 | 0.013 | 1.31 | 0.0 | 0.07 | 13.35 | 0.01 | 1.977 | 5.18 | 0.15 | 7.6 | 92.4 | 0.0 | -2.18 | 0.79 | 0.80 | 1.59 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 14.15 | 0.00 | 1.730 | 8.85 | 0.05 | 5.2 | 94.8 | 0.0 | -0.52 | 0.90 | 0.79 | 0.80 | 1.25 | 74579 | 4656 | 13 | 0 | 22 | 0 | 37485 | logfile |
✔ | 7Q61 | 13849 | 2024-02-14 | 2021-11-05 | 2.88 | 3.70 | 2.93 | 3.4 | 0.006 | 1.09 | 0.0 | 0.06 | 14.48 | 0.01 | 2.275 | 3.96 | 0.10 | 4.5 | 95.2 | 0.2 | -1.84 | 0.82 | 0.81 | 3.62 | 3.4 | 0.003 | 0.73 | 0.0 | 0.05 | 15.23 | 0.00 | 2.186 | 11.71 | 2.48 | 3.7 | 96.0 | 0.3 | -0.13 | 0.45 | 0.80 | 0.81 | 2.76 | 9535 | 1210 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 7U9Q | 26405 | 2023-12-15 | 2022-03-11 | 3.11 | 3.51 | — | 1.9 | 0.003 | 0.85 | 0.0 | 0.04 | 14.30 | 0.01 | 2.065 | 12.40 | 0.66 | 3.4 | 96.5 | 0.1 | -1.28 | 0.86 | 0.79 | 2.19 | 1.9 | 0.004 | 0.72 | 0.0 | 0.04 | 14.83 | 0.00 | 2.099 | 12.36 | 0.16 | 3.7 | 96.2 | 0.1 | 0.74 | 0.47 | 0.88 | 0.86 | 2.51 | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7U9Q | 26405 | 2023-11-20 | 2022-03-11 | 3.11 | 3.51 | — | 1.9 | 0.003 | 0.85 | 0.0 | 0.04 | 14.10 | 0.01 | 2.065 | 12.40 | 0.66 | 3.4 | 96.5 | 0.1 | -1.28 | 0.86 | 0.79 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |