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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7M3N | 23658 | 2023-06-14 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | 2.0 | 0.002 | 0.55 | 0.0 | 0.04 | 16.96 | 0.00 | 2.273 | 6.81 | 2.75 | 3.7 | 96.3 | 0.0 | -0.46 | 0.48 | 0.45 | 0.84 | 4.74 | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BER | 16009 | 2023-06-14 | 2022-10-21 | 4.0 | 4.97 | 1.55 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 12.68 | 0.00 | 2.214 | 12.92 | 0.00 | 4.0 | 96.0 | 0.0 | 2.47 | 0.55 | 0.79 | — | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.34 | 0.00 | 2.180 | 13.84 | 0.55 | 5.2 | 94.8 | 0.0 | 2.91 | 1.18 | 0.54 | 0.81 | — | 3309 | 414 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RE2 | 4839 | 2023-06-14 | 2019-04-12 | 3.2 | 3.21 | — | 3.3 | 0.012 | 1.02 | 0.0 | 0.06 | 14.02 | 0.01 | 1.994 | 5.94 | 0.43 | 4.9 | 94.9 | 0.2 | -3.96 | 0.73 | 0.85 | 2.91 | 3.3 | 0.002 | 0.58 | 0.0 | 0.04 | 15.52 | 0.00 | 2.035 | 9.77 | 0.21 | 3.3 | 96.6 | 0.1 | 0.20 | 1.59 | 0.72 | 0.87 | 2.47 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7Y7K | 33668 | 2023-06-14 | 2022-06-22 | 4.4 | 4.96 | 5.46 | 4.3 | 0.010 | 1.63 | 0.0 | 0.07 | 13.11 | 0.01 | 2.215 | 33.93 | 3.90 | 10.3 | 86.1 | 3.6 | -2.50 | 0.71 | 0.63 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 11.34 | 0.00 | 2.127 | 13.54 | 0.35 | 6.0 | 93.8 | 0.2 | -1.28 | 1.66 | 0.73 | 0.67 | — | 2942 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YQM | 34029 | 2023-06-14 | 2022-08-08 | 2.89 | 3.15 | 2.89 | 3.2 | 0.005 | 0.58 | 0.0 | 0.05 | 11.88 | 0.00 | 2.294 | 1.86 | 0.17 | 4.7 | 95.3 | 0.0 | -0.02 | 0.67 | 0.78 | 4.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5656 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDW | 4833 | 2023-06-14 | 2019-04-12 | 3.8 | 3.78 | — | 3.8 | 0.010 | 1.05 | 0.0 | 0.06 | 15.03 | 0.01 | 2.050 | 6.72 | 0.55 | 5.8 | 94.0 | 0.2 | -4.32 | 0.66 | 0.83 | 1.85 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 16.47 | 0.00 | 1.917 | 11.85 | 0.32 | 4.5 | 95.4 | 0.1 | -0.25 | 0.58 | 0.66 | 0.83 | 1.25 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RE3 | 4840 | 2023-06-14 | 2019-04-12 | 3.3 | 3.43 | 3.51 | 3.4 | 0.012 | 1.02 | 0.0 | 0.06 | 14.02 | 0.01 | 1.994 | 5.94 | 0.43 | 4.9 | 94.9 | 0.2 | -3.96 | 0.69 | 0.80 | 2.37 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.89 | 0.00 | 1.929 | 10.59 | 0.41 | 3.9 | 96.0 | 0.1 | 0.13 | 1.23 | 0.71 | 0.86 | 1.86 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7UPX | 26677 | 2023-06-14 | 2022-04-18 | 3.2 | 3.46 | — | 3.4 | 0.013 | 1.88 | 4.0 | 0.11 | 13.52 | 0.01 | 2.176 | 5.28 | 2.20 | 5.4 | 93.2 | 1.4 | -0.66 | 0.64 | 0.88 | 3.81 | 3.4 | 0.004 | 0.71 | 0.0 | 0.05 | 14.83 | 0.00 | 2.085 | 7.45 | 0.18 | 5.1 | 94.8 | 0.2 | 0.12 | 0.48 | 0.64 | 0.88 | 3.58 | 4930 | 635 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 8BF8 | 16016 | 2023-06-14 | 2022-10-24 | 2.8 | 3.14 | 2.80 | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 13.85 | 0.00 | 2.203 | 8.73 | 0.93 | 2.7 | 97.3 | 0.0 | 0.92 | 0.64 | 0.76 | 2.97 | 3.1 | 0.003 | 0.54 | 0.0 | 0.03 | 15.05 | 0.00 | 2.097 | 9.34 | 3.26 | 2.7 | 97.3 | 0.0 | 0.66 | 0.89 | 0.59 | 0.75 | 2.83 | 4686 | 302 | 2 | 111 | 0 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-06-14 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7RU4 | 24696 | 2023-06-14 | 2021-08-16 | 3.3 | 3.64 | 3.27 | 3.4 | 0.023 | 1.89 | 0.0 | 0.11 | 9.85 | 0.01 | 2.362 | 0.60 | 0.55 | 3.1 | 96.9 | 0.0 | 0.06 | 0.75 | 0.80 | 3.98 | 3.4 | 0.003 | 0.75 | 0.0 | 0.05 | 15.37 | 0.00 | 2.181 | 10.06 | 0.27 | 6.0 | 94.0 | 0.0 | -0.88 | 1.41 | 0.76 | 0.82 | 2.84 | 3382 | 428 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6HS7 | 0264 | 2023-06-14 | 2018-09-28 | 4.6 | 3.02 | 4.27 | 4.3 | 0.006 | 1.00 | 1.0 | 0.05 | 14.59 | 0.01 | 2.156 | 6.39 | 0.04 | 10.5 | 89.5 | 0.0 | -5.02 | 0.77 | 0.69 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 14.05 | 0.00 | 2.131 | 10.59 | 0.07 | 7.9 | 92.1 | 0.0 | -2.30 | 0.94 | 0.79 | 0.71 | — | 52890 | 6905 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YJ5 | 10816 | 2023-06-14 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.22 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.007 | 0.81 | 0.0 | 0.05 | 15.31 | 0.01 | 2.257 | 11.88 | 0.61 | 12.2 | 87.8 | 0.0 | -2.14 | 0.81 | 0.52 | 0.74 | 3.59 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oDR | 12845 | 2023-06-14 | 2021-04-30 | 2.9 | 3.11 | — | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 11.20 | 0.02 | 1.963 | 4.98 | 0.44 | 1.1 | 98.9 | 0.0 | 0.96 | 0.74 | 0.80 | 3.31 | 3.0 | 0.003 | 0.70 | 0.0 | 0.04 | 15.27 | 0.01 | 1.900 | 10.20 | 2.30 | 2.0 | 98.0 | 0.0 | 0.89 | 1.26 | 0.76 | 0.84 | 2.70 | 107464 | 9244 | 68 | 1489 | 135 | 0 | 0 | logfile |
✔ | 7T01 | 25574 | 2023-06-14 | 2021-11-29 | 2.69 | 2.92 | 2.50 | 3.2 | 0.004 | 0.87 | 0.0 | 0.05 | 12.30 | 0.01 | 2.335 | 1.37 | 0.00 | 3.8 | 96.2 | 0.0 | -1.08 | 0.71 | 0.83 | 4.37 | 3.2 | 0.004 | 0.99 | 0.0 | 0.05 | 16.01 | 0.01 | 2.225 | 16.10 | 2.41 | 5.2 | 94.8 | 0.0 | -1.57 | 1.11 | 0.72 | 0.85 | 3.47 | 3343 | 428 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XoC | 33344 | 2023-06-14 | 2022-05-01 | 3.0 | 2.28 | 3.19 | 2.1 | 0.002 | 0.49 | 0.0 | 0.04 | 8.65 | 0.00 | 2.149 | 5.34 | 0.00 | 2.1 | 97.9 | 0.0 | -2.11 | 0.73 | 0.69 | 2.72 | 2.1 | 0.003 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 2.079 | 8.76 | 2.35 | 2.9 | 97.1 | 0.0 | 0.79 | 1.11 | 0.77 | 0.82 | 3.00 | 6432 | 786 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6RE8 | 4845 | 2023-06-14 | 2019-04-12 | 3.8 | 3.75 | — | 3.8 | 0.006 | 0.86 | 0.0 | 0.05 | 14.58 | 0.01 | 1.985 | 5.76 | 0.21 | 4.3 | 95.5 | 0.2 | -4.12 | 0.67 | 0.81 | 1.73 | 3.7 | 0.004 | 0.67 | 0.0 | 0.04 | 16.16 | 0.00 | 1.859 | 12.39 | 0.41 | 4.7 | 95.3 | 0.1 | -0.18 | 1.22 | 0.67 | 0.82 | 1.37 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6REC | 4849 | 2023-06-14 | 2019-04-12 | 3.3 | 3.39 | 3.31 | 3.3 | 0.011 | 1.02 | 0.0 | 0.06 | 14.40 | 0.01 | 2.140 | 5.40 | 0.37 | 4.8 | 95.1 | 0.1 | -3.95 | 0.66 | 0.81 | 2.79 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.81 | 0.00 | 1.964 | 9.82 | 0.18 | 3.9 | 96.0 | 0.1 | 0.07 | 1.60 | 0.68 | 0.85 | 2.15 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RD9 | 4810 | 2023-06-14 | 2019-04-12 | 3.0 | 3.00 | — | 3.1 | 0.014 | 1.11 | 0.0 | 0.07 | 14.22 | 0.01 | 1.876 | 6.07 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.71 | 0.84 | 3.64 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.97 | 0.00 | 1.858 | 9.77 | 1.65 | 3.6 | 96.3 | 0.1 | 0.22 | 0.50 | 0.75 | 0.87 | 2.89 | 53776 | 7103 | 41 | 0 | 11 | 28 | 0 | logfile |
✔ | 6RDQ | 4827 | 2023-06-14 | 2019-04-12 | 4.0 | 3.99 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.05 | 14.97 | 0.01 | 1.908 | 6.99 | 0.44 | 5.2 | 94.6 | 0.2 | -4.22 | 0.72 | 0.79 | — | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.63 | 0.00 | 1.887 | 14.01 | 0.37 | 5.2 | 94.6 | 0.1 | -0.59 | 0.62 | 0.72 | 0.81 | — | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |