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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8H0Y | 34418 | 2023-08-18 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.85 | 0.0 | 0.06 | 13.30 | 0.01 | 2.274 | 2.60 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | 3.0 | 0.003 | 0.54 | 0.0 | 0.05 | 14.97 | 0.00 | 2.237 | 4.38 | 1.57 | 2.7 | 97.3 | 0.0 | -0.12 | 1.14 | 0.82 | 0.88 | 3.26 | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✔ | 8H0Y | 34418 | 2023-10-12 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.85 | 0.0 | 0.06 | 13.30 | 0.01 | 2.274 | 2.60 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | 3.0 | 0.003 | 0.54 | 0.0 | 0.05 | 14.97 | 0.00 | 2.237 | 4.38 | 1.57 | 2.7 | 97.3 | 0.0 | -0.12 | 1.14 | 0.82 | 0.88 | 3.26 | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✔ | 8H0Y | 34418 | 2023-11-19 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.85 | 0.0 | 0.06 | 13.30 | 0.01 | 2.274 | 2.60 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | 3.0 | 0.003 | 0.54 | 0.0 | 0.05 | 14.97 | 0.00 | 2.237 | 4.38 | 1.57 | 2.7 | 97.3 | 0.0 | -0.12 | 1.14 | 0.82 | 0.88 | 3.26 | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✔ | 8H0Y | 34418 | 2023-12-13 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.85 | 0.0 | 0.06 | 13.44 | 0.01 | 2.274 | 2.60 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | 3.0 | 0.005 | 0.61 | 0.0 | 0.05 | 14.67 | 0.00 | 2.192 | 4.42 | 1.72 | 3.6 | 96.4 | 0.0 | -0.41 | 1.14 | 0.82 | 0.88 | 3.38 | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✔ | 7RW6 | 24709 | 2023-07-06 | 2021-08-19 | 2.55 | 2.65 | — | 2.8 | 0.003 | 0.55 | 0.0 | 0.04 | 11.59 | 0.00 | 2.167 | 9.15 | 0.00 | 5.9 | 94.1 | 0.0 | 0.17 | 0.86 | 0.86 | 4.11 | 2.7 | 0.004 | 0.66 | 0.0 | 0.04 | 14.85 | 0.00 | 2.023 | 10.39 | 1.15 | 5.9 | 94.1 | 0.0 | 0.16 | 0.39 | 0.87 | 0.88 | 3.64 | 13130 | 1634 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6X5C | 22049 | 2023-07-07 | 2020-05-25 | 4.04 | 4.17 | 3.97 | 4.0 | 0.021 | 1.82 | 0.0 | 0.13 | 12.19 | 0.01 | 2.409 | 0.72 | 0.00 | 2.3 | 97.7 | 0.0 | 0.24 | 0.66 | 0.71 | — | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 14.61 | 0.00 | 2.094 | 14.19 | 0.00 | 5.8 | 94.2 | 0.0 | -1.26 | 2.49 | 0.67 | 0.74 | — | 14644 | 1776 | 19 | 0 | 43 | 0 | 0 | logfile |
✔ | 7DX0 | 30891 | 2024-02-19 | 2021-01-18 | 3.2 | 3.26 | — | 3.2 | 0.012 | 1.04 | 0.0 | 0.08 | 18.00 | 0.01 | 1.918 | 22.73 | 12.58 | 10.3 | 86.6 | 3.2 | -4.14 | 0.70 | 0.77 | 2.21 | 3.2 | 0.004 | 0.72 | 0.0 | 0.05 | 16.35 | 0.00 | 2.134 | 7.21 | 3.57 | 6.9 | 92.9 | 0.2 | -0.81 | 1.72 | 0.74 | 0.86 | 2.15 | 23752 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7DX0 | 30891 | 2024-03-19 | 2021-01-18 | 3.2 | 3.26 | — | 3.2 | 0.012 | 1.04 | 0.0 | 0.08 | 18.00 | 0.01 | 1.918 | 22.73 | 12.58 | 10.3 | 86.6 | 3.2 | -4.14 | 0.70 | 0.77 | 2.21 | 3.2 | 0.004 | 0.72 | 0.0 | 0.05 | 16.35 | 0.00 | 2.134 | 7.21 | 3.57 | 6.9 | 92.9 | 0.2 | -0.81 | 1.72 | 0.74 | 0.86 | 2.15 | 23752 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7DX0 | 30891 | 2023-06-22 | 2021-01-18 | 3.2 | 3.26 | — | 3.2 | 0.012 | 1.04 | 0.0 | 0.08 | 18.42 | 0.01 | 1.918 | 22.73 | 12.58 | 10.3 | 86.6 | 3.2 | -4.14 | 0.70 | 0.77 | 2.21 | 3.2 | 0.004 | 0.72 | 0.0 | 0.05 | 16.93 | 0.00 | 2.152 | 6.72 | 0.47 | 6.4 | 93.4 | 0.2 | -0.75 | 1.73 | 0.74 | 0.86 | 2.14 | 23752 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7DX0 | 30891 | 2023-10-11 | 2021-01-18 | 3.2 | 3.26 | — | 3.2 | 0.012 | 1.04 | 0.0 | 0.08 | 18.42 | 0.01 | 1.918 | 22.73 | 12.58 | 10.3 | 86.6 | 3.2 | -4.14 | 0.70 | 0.77 | 2.21 | 3.2 | 0.004 | 0.72 | 0.0 | 0.05 | 16.93 | 0.00 | 2.152 | 6.72 | 0.47 | 6.4 | 93.4 | 0.2 | -0.75 | 1.73 | 0.74 | 0.86 | 2.14 | 23752 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7DX0 | 30891 | 2023-11-18 | 2021-01-18 | 3.2 | 3.26 | — | 3.2 | 0.012 | 1.04 | 0.0 | 0.08 | 18.42 | 0.01 | 1.918 | 22.73 | 12.58 | 10.3 | 86.6 | 3.2 | -4.14 | 0.70 | 0.77 | 2.21 | 3.2 | 0.004 | 0.72 | 0.0 | 0.05 | 16.93 | 0.00 | 2.152 | 6.72 | 0.47 | 6.4 | 93.4 | 0.2 | -0.75 | 1.73 | 0.74 | 0.86 | 2.14 | 23752 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 7DX0 | 30891 | 2023-12-13 | 2021-01-18 | 3.2 | 3.26 | — | 3.2 | 0.012 | 1.04 | 0.0 | 0.08 | 18.00 | 0.01 | 1.918 | 22.73 | 12.58 | 10.3 | 86.6 | 3.2 | -4.14 | 0.70 | 0.77 | 2.21 | 3.2 | 0.005 | 0.74 | 0.0 | 0.05 | 16.11 | 0.00 | 2.126 | 7.68 | 0.43 | 7.1 | 92.7 | 0.2 | -0.81 | 1.73 | 0.74 | 0.86 | 2.16 | 23752 | 2914 | 28 | 0 | 71 | 0 | 0 | logfile |
✔ | 6UDJ | 20739 | 2024-02-20 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 18.53 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.003 | 0.66 | 0.0 | 0.05 | 15.29 | 0.00 | 2.123 | 6.70 | 2.82 | 3.5 | 96.5 | 0.0 | -0.10 | 0.42 | 0.71 | 0.86 | 4.35 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |
✔ | 6UDJ | 20739 | 2024-03-20 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 18.53 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.003 | 0.66 | 0.0 | 0.05 | 15.29 | 0.00 | 2.123 | 6.70 | 2.82 | 3.5 | 96.5 | 0.0 | -0.10 | 0.42 | 0.71 | 0.86 | 4.35 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |
✔ | 6UDJ | 20739 | 2023-06-23 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 13.98 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.004 | 0.68 | 0.0 | 0.05 | 16.32 | 0.00 | 2.015 | 6.64 | 2.36 | 3.3 | 96.7 | 0.0 | -0.07 | 0.42 | 0.71 | 0.86 | 4.46 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |
✔ | 6UDJ | 20739 | 2023-07-12 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 13.98 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.004 | 0.68 | 0.0 | 0.05 | 16.32 | 0.00 | 2.015 | 6.64 | 2.36 | 3.3 | 96.7 | 0.0 | -0.07 | 0.42 | 0.71 | 0.86 | 4.46 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |
✔ | 6UDJ | 20739 | 2023-08-19 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 13.98 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.004 | 0.68 | 0.0 | 0.05 | 16.32 | 0.00 | 2.015 | 6.64 | 2.36 | 3.3 | 96.7 | 0.0 | -0.07 | 0.42 | 0.71 | 0.86 | 4.46 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |
✔ | 6UDJ | 20739 | 2023-10-13 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 13.98 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.004 | 0.68 | 0.0 | 0.05 | 16.32 | 0.00 | 2.015 | 6.64 | 2.36 | 3.3 | 96.7 | 0.0 | -0.07 | 0.42 | 0.71 | 0.86 | 4.46 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |
✔ | 7CZX | 30520 | 2023-07-16 | 2020-09-09 | 2.8 | 2.91 | — | 2.9 | 0.011 | 1.10 | 1.0 | 0.07 | 17.79 | 0.01 | 1.913 | 29.18 | 11.08 | 11.0 | 85.5 | 3.5 | -3.96 | 0.66 | 0.73 | 1.71 | 2.9 | 0.003 | 0.76 | 0.0 | 0.05 | 17.17 | 0.00 | 2.181 | 8.91 | 3.90 | 7.5 | 92.3 | 0.2 | -1.10 | 1.40 | 0.71 | 0.82 | 2.02 | 34879 | 4368 | 32 | 0 | 71 | 0 | 0 | logfile |
✔ | 6UDJ | 20739 | 2023-12-14 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 13.73 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.003 | 0.65 | 0.0 | 0.04 | 15.14 | 0.00 | 2.056 | 6.58 | 2.29 | 3.3 | 96.7 | 0.0 | 0.07 | 0.44 | 0.70 | 0.86 | 4.32 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |