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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7E7S | 31003 | 2023-11-14 | 2021-02-27 | 3.3 | 3.32 | 3.27 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.41 | 0.00 | 2.166 | 8.26 | 0.00 | 2.6 | 97.4 | 0.0 | -0.13 | 0.68 | 0.82 | 1.44 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 15.91 | 0.00 | 2.219 | 8.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.42 | 1.29 | 0.66 | 0.82 | 0.60 | 7884 | 1020 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7E7S | 31003 | 2023-12-08 | 2021-02-27 | 3.3 | 3.32 | 3.27 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.41 | 0.00 | 2.166 | 8.26 | 0.00 | 2.6 | 97.4 | 0.0 | -0.13 | 0.68 | 0.82 | 1.44 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 15.91 | 0.00 | 2.219 | 8.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.42 | 1.29 | 0.66 | 0.82 | 0.60 | 7884 | 1020 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8oiF | 16891 | 2024-02-13 | 2023-03-22 | 3.5 | 3.41 | 3.30 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 13.83 | 0.01 | 2.246 | 6.05 | 0.00 | 6.8 | 93.2 | 0.0 | -0.42 | 0.75 | 0.81 | 3.19 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 14.22 | 0.00 | 1.109 | 5.82 | 2.32 | 5.3 | 94.7 | 0.0 | -0.04 | 0.85 | 0.75 | 0.81 | 3.06 | 6589 | 934 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6QK7 | 4571 | 2023-10-10 | 2019-01-28 | 3.3 | 3.70 | 3.35 | 3.4 | 0.004 | 0.75 | 0.0 | 0.06 | 10.67 | 0.01 | 1.993 | 6.24 | 0.44 | 9.2 | 90.8 | 0.0 | -4.70 | 0.86 | 0.82 | 2.57 | 3.4 | 0.002 | 0.64 | 0.0 | 0.04 | 13.28 | 0.00 | 2.138 | 7.84 | 0.22 | 6.7 | 93.3 | 0.0 | -1.45 | 2.78 | 0.87 | 0.87 | 1.84 | 20790 | 2592 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 8oiF | 16891 | 2024-01-17 | 2023-03-22 | 3.5 | 3.41 | 3.30 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 13.83 | 0.01 | 2.246 | 6.05 | 0.00 | 6.8 | 93.2 | 0.0 | -0.42 | 0.75 | 0.81 | 3.19 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 14.22 | 0.00 | 1.109 | 5.82 | 2.32 | 5.3 | 94.7 | 0.0 | -0.04 | 0.85 | 0.75 | 0.81 | 3.06 | 6589 | 934 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6WKT | 21708 | 2024-01-17 | 2020-04-16 | 3.4 | 3.21 | 3.09 | 3.3 | 0.004 | 0.81 | 0.0 | 0.05 | 13.97 | 0.01 | 2.329 | 0.00 | 0.00 | 1.9 | 98.1 | 0.0 | -3.42 | 0.65 | 0.75 | 3.69 | 3.3 | 0.002 | 0.55 | 0.0 | 0.03 | 16.09 | 0.00 | 2.218 | 9.65 | 0.00 | 3.8 | 96.2 | 0.0 | 4.32 | 1.34 | 0.63 | 0.74 | 3.16 | 3152 | 424 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oiF | 16891 | 2024-03-11 | 2023-03-22 | 3.5 | 3.41 | 3.30 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 13.83 | 0.01 | 2.246 | 6.05 | 0.00 | 6.8 | 93.2 | 0.0 | -0.42 | 0.75 | 0.81 | 3.19 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 14.22 | 0.00 | 1.109 | 5.82 | 2.32 | 5.3 | 94.7 | 0.0 | -0.04 | 0.85 | 0.75 | 0.81 | 3.06 | 6589 | 934 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7S36 | 24817 | 2024-01-20 | 2021-09-04 | 3.2 | 3.27 | 3.15 | 3.0 | 0.008 | 0.99 | 0.0 | 0.05 | 16.90 | 0.01 | 2.207 | 2.98 | 0.16 | 3.9 | 96.1 | 0.0 | -1.50 | 0.86 | 0.82 | 3.13 | 3.1 | 0.002 | 0.51 | 0.0 | 0.04 | 18.28 | 0.00 | 2.155 | 8.23 | 1.65 | 2.0 | 98.0 | 0.0 | 0.55 | 2.22 | 0.87 | 0.85 | 2.89 | 13821 | 1353 | 4 | 130 | 1 | 0 | 0 | logfile |
✔ | 7S36 | 24817 | 2023-07-07 | 2021-09-04 | 3.2 | 3.27 | 3.15 | 3.0 | 0.008 | 0.99 | 0.0 | 0.05 | 15.13 | 0.01 | 2.207 | 2.98 | 0.16 | 3.9 | 96.1 | 0.0 | -1.50 | 0.86 | 0.82 | 3.13 | 3.1 | 0.002 | 0.50 | 0.0 | 0.04 | 16.64 | 0.00 | 2.158 | 7.93 | 0.25 | 2.2 | 97.8 | 0.0 | 0.49 | 2.22 | 0.87 | 0.85 | 2.92 | 13821 | 1353 | 4 | 130 | 1 | 0 | 0 | logfile |
✔ | 7S36 | 24817 | 2023-08-13 | 2021-09-04 | 3.2 | 3.27 | 3.15 | 3.0 | 0.008 | 0.99 | 0.0 | 0.05 | 15.13 | 0.01 | 2.207 | 2.98 | 0.16 | 3.9 | 96.1 | 0.0 | -1.50 | 0.86 | 0.82 | 3.13 | 3.1 | 0.002 | 0.50 | 0.0 | 0.04 | 16.64 | 0.00 | 2.158 | 7.93 | 0.25 | 2.2 | 97.8 | 0.0 | 0.49 | 2.22 | 0.87 | 0.85 | 2.92 | 13821 | 1353 | 4 | 130 | 1 | 0 | 0 | logfile |
✔ | 7MQD | 23943 | 2024-02-18 | 2021-05-05 | 3.25 | 3.21 | 3.21 | 3.3 | 0.003 | 0.62 | 0.0 | 0.05 | 14.59 | 0.00 | 2.456 | 1.98 | 0.00 | 1.0 | 99.0 | 0.0 | 1.04 | 0.75 | 0.83 | 3.89 | 3.3 | 0.002 | 0.45 | 0.0 | 0.04 | 15.65 | 0.00 | 2.277 | 3.11 | 0.76 | 0.1 | 99.9 | 0.0 | 1.82 | 0.30 | 0.76 | 0.86 | 4.26 | 11960 | 1592 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 7MQD | 23943 | 2024-03-19 | 2021-05-05 | 3.25 | 3.21 | 3.21 | 3.3 | 0.003 | 0.62 | 0.0 | 0.05 | 14.59 | 0.00 | 2.456 | 1.98 | 0.00 | 1.0 | 99.0 | 0.0 | 1.04 | 0.75 | 0.83 | 3.89 | 3.3 | 0.002 | 0.45 | 0.0 | 0.04 | 15.65 | 0.00 | 2.277 | 3.11 | 0.76 | 0.1 | 99.9 | 0.0 | 1.82 | 0.30 | 0.76 | 0.86 | 4.26 | 11960 | 1592 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 8JSM | 36623 | 2024-02-16 | 2023-06-20 | 3.3 | 3.40 | 3.24 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.38 | 0.00 | 2.050 | 5.08 | 0.06 | 5.7 | 94.0 | 0.3 | 0.89 | 0.77 | 0.86 | 2.59 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 16.83 | 0.00 | 2.145 | 5.69 | 1.35 | 5.9 | 93.8 | 0.3 | 1.17 | 1.69 | 0.79 | 0.89 | 2.27 | 14856 | 1856 | 7 | 10 | 1 | 0 | 0 | logfile |
✔ | 8JSM | 36623 | 2024-03-16 | 2023-06-20 | 3.3 | 3.40 | 3.24 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.38 | 0.00 | 2.050 | 5.08 | 0.06 | 5.7 | 94.0 | 0.3 | 0.89 | 0.77 | 0.86 | 2.59 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 16.83 | 0.00 | 2.145 | 5.69 | 1.35 | 5.9 | 93.8 | 0.3 | 1.17 | 1.69 | 0.79 | 0.89 | 2.27 | 14856 | 1856 | 7 | 10 | 1 | 0 | 0 | logfile |
✔ | 6ZY6 | 11551 | 2023-12-10 | 2020-07-30 | 4.1 | 4.75 | 4.09 | 4.6 | 0.010 | 1.07 | 2.0 | 0.08 | 13.75 | 0.01 | 2.304 | 5.48 | 0.00 | 1.6 | 98.4 | 0.0 | -0.70 | 0.83 | 0.77 | — | 4.6 | 0.002 | 0.62 | 0.0 | 0.04 | 16.14 | 0.00 | 2.149 | 9.79 | 0.00 | 2.9 | 97.1 | 0.0 | 0.38 | 1.88 | 0.85 | 0.81 | — | 13504 | 1520 | 8 | 60 | 2 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2024-02-17 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.002 | 0.45 | 0.0 | 0.03 | 13.27 | 0.00 | 2.167 | 4.19 | 0.81 | 2.9 | 97.1 | 0.0 | 4.90 | 1.14 | 0.75 | 0.89 | 2.86 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E7S | 31003 | 2024-01-18 | 2021-02-27 | 3.3 | 3.32 | 3.27 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.41 | 0.00 | 2.166 | 8.26 | 0.00 | 2.6 | 97.4 | 0.0 | -0.13 | 0.68 | 0.82 | 1.44 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.211 | 8.64 | 1.26 | 3.2 | 96.8 | 0.0 | 1.44 | 1.28 | 0.65 | 0.82 | 0.60 | 7884 | 1020 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7E7S | 31003 | 2024-02-13 | 2021-02-27 | 3.3 | 3.32 | 3.27 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.41 | 0.00 | 2.166 | 8.26 | 0.00 | 2.6 | 97.4 | 0.0 | -0.13 | 0.68 | 0.82 | 1.44 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.211 | 8.64 | 1.26 | 3.2 | 96.8 | 0.0 | 1.44 | 1.28 | 0.65 | 0.82 | 0.60 | 7884 | 1020 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7DHR | 30682 | 2023-07-04 | 2020-11-17 | 3.8 | 3.96 | — | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 14.18 | 0.01 | 2.329 | 3.92 | 0.31 | 9.1 | 90.8 | 0.1 | -6.33 | 0.70 | 0.77 | 3.13 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 15.36 | 0.00 | 2.231 | 7.99 | 0.77 | 5.7 | 94.3 | 0.0 | -3.21 | 0.46 | 0.69 | 0.76 | 1.86 | 7057 | 977 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DHR | 30682 | 2023-06-15 | 2020-11-17 | 3.8 | 3.96 | — | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 14.18 | 0.01 | 2.329 | 3.92 | 0.31 | 9.1 | 90.8 | 0.1 | -6.33 | 0.70 | 0.77 | 3.13 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 15.36 | 0.00 | 2.231 | 7.99 | 0.77 | 5.7 | 94.3 | 0.0 | -3.21 | 0.46 | 0.69 | 0.76 | 1.86 | 7057 | 977 | 5 | 0 | 1 | 0 | 0 | logfile |