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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N5D | 24186 | 2023-12-12 | 2021-06-05 | 2.8 | 2.25 | — | 1.3 | 0.023 | 1.52 | 0.0 | 0.09 | 9.91 | 0.01 | 2.378 | 0.32 | 0.00 | 1.1 | 98.9 | 0.0 | 1.83 | 0.84 | 0.83 | 4.14 | 1.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.00 | 0.00 | 2.173 | 6.93 | 1.62 | 1.9 | 98.1 | 0.0 | 2.44 | 0.66 | 0.82 | 0.82 | 3.20 | 20593 | 2612 | 14 | 0 | 7 | 0 | 0 | logfile |
✔ | 7N5D | 24186 | 2023-07-10 | 2021-06-05 | 2.8 | 2.25 | — | 1.3 | 0.023 | 1.52 | 0.0 | 0.09 | 9.91 | 0.01 | 2.378 | 0.32 | 0.00 | 1.1 | 98.9 | 0.0 | 1.83 | 0.84 | 0.83 | 4.14 | 1.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.00 | 0.00 | 2.173 | 6.93 | 1.62 | 1.9 | 98.1 | 0.0 | 2.44 | 0.66 | 0.82 | 0.82 | 3.20 | 20593 | 2612 | 14 | 0 | 7 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2024-01-17 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.3 | 0.006 | 0.86 | 0.0 | 0.05 | 12.15 | 0.00 | 2.164 | 13.33 | 11.25 | 16.5 | 83.5 | 0.0 | -1.70 | 0.74 | 0.62 | 0.56 | 2.72 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K3V | 22657 | 2023-06-27 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.005 | 0.79 | 0.0 | 0.05 | 14.91 | 0.01 | 1.971 | 1.78 | 0.00 | 1.2 | 98.8 | 0.0 | 3.72 | 0.35 | 0.73 | 0.83 | 8.91 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 8CTE | 26988 | 2024-02-23 | 2022-05-14 | 2.9 | 1.86 | 2.80 | 1.5 | 0.003 | 0.53 | 1.0 | 0.04 | 11.90 | 0.00 | 2.214 | 5.55 | 2.34 | 1.6 | 98.3 | 0.1 | 2.02 | 0.78 | 0.75 | 3.53 | 1.4 | 0.004 | 0.57 | 0.0 | 0.04 | 14.62 | 0.00 | 2.070 | 7.41 | 1.85 | 2.0 | 98.0 | 0.1 | 1.82 | 0.56 | 0.82 | 0.81 | 3.86 | 38844 | 4984 | 21 | 0 | 16 | 0 | 0 | logfile |
✔ | 7VUH | 32128 | 2023-11-14 | 2021-11-02 | 3.22 | 2.19 | — | 1.9 | 0.004 | 0.66 | 0.0 | 0.04 | 13.59 | 0.00 | 2.099 | 13.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.87 | 0.71 | 0.69 | 2.81 | 1.4 | 0.005 | 0.70 | 0.0 | 0.04 | 15.83 | 0.00 | 2.031 | 14.94 | 0.11 | 6.0 | 94.0 | 0.0 | -1.28 | 0.38 | 0.72 | 0.73 | 2.42 | 8302 | 1042 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7K3V | 22657 | 2023-07-17 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.005 | 0.79 | 0.0 | 0.05 | 14.91 | 0.01 | 1.971 | 1.78 | 0.00 | 1.2 | 98.8 | 0.0 | 3.72 | 0.35 | 0.73 | 0.83 | 8.91 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 7T2G | 25612 | 2023-09-28 | 2021-12-04 | 2.5 | 1.71 | — | 1.4 | 0.009 | 1.14 | 0.0 | 0.05 | 12.09 | 0.01 | 2.214 | 13.39 | 1.00 | 3.5 | 96.5 | 0.0 | 0.61 | 0.80 | 0.81 | 5.15 | 1.4 | 0.004 | 0.81 | 0.0 | 0.04 | 15.33 | 0.00 | 2.126 | 11.11 | 1.57 | 2.7 | 97.3 | 0.0 | 0.65 | 0.36 | 0.80 | 0.81 | 4.61 | 6922 | 898 | 4 | 0 | 3 | 8 | 0 | logfile |
✔ | 7K3V | 22657 | 2024-02-23 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.91 | 0.00 | 1.994 | 2.07 | 0.00 | 1.2 | 98.8 | 0.0 | 4.00 | 0.37 | 0.73 | 0.83 | 8.88 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 7K3V | 22657 | 2024-03-23 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.91 | 0.00 | 1.994 | 2.07 | 0.00 | 1.2 | 98.8 | 0.0 | 4.00 | 0.37 | 0.73 | 0.83 | 8.88 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 8CTE | 26988 | 2023-08-24 | 2022-05-14 | 2.9 | 1.86 | 2.80 | 1.5 | 0.003 | 0.53 | 1.0 | 0.04 | 11.34 | 0.00 | 2.214 | 5.55 | 2.34 | 1.6 | 98.3 | 0.1 | 2.02 | 0.78 | 0.75 | 3.53 | 1.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.01 | 0.00 | 2.104 | 7.16 | 1.53 | 1.8 | 98.1 | 0.1 | 1.87 | 0.57 | 0.82 | 0.81 | 3.91 | 38844 | 4984 | 21 | 0 | 16 | 0 | 0 | logfile |
✔ | 7T2G | 25612 | 2023-08-10 | 2021-12-04 | 2.5 | 1.71 | — | 1.4 | 0.009 | 1.14 | 0.0 | 0.05 | 12.09 | 0.01 | 2.214 | 13.39 | 1.00 | 3.5 | 96.5 | 0.0 | 0.61 | 0.80 | 0.81 | 5.15 | 1.4 | 0.004 | 0.81 | 0.0 | 0.04 | 15.33 | 0.00 | 2.126 | 11.11 | 1.57 | 2.7 | 97.3 | 0.0 | 0.65 | 0.36 | 0.80 | 0.81 | 4.61 | 6922 | 898 | 4 | 0 | 3 | 8 | 0 | logfile |
✔ | 8CTE | 26988 | 2023-10-18 | 2022-05-14 | 2.9 | 1.86 | 2.80 | 1.5 | 0.003 | 0.53 | 1.0 | 0.04 | 11.34 | 0.00 | 2.214 | 5.55 | 2.34 | 1.6 | 98.3 | 0.1 | 2.02 | 0.78 | 0.75 | 3.53 | 1.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.01 | 0.00 | 2.104 | 7.16 | 1.53 | 1.8 | 98.1 | 0.1 | 1.87 | 0.57 | 0.82 | 0.81 | 3.91 | 38844 | 4984 | 21 | 0 | 16 | 0 | 0 | logfile |
✔ | 8CTE | 26988 | 2023-06-28 | 2022-05-14 | 2.9 | 1.86 | 2.80 | 1.5 | 0.003 | 0.53 | 1.0 | 0.04 | 11.34 | 0.00 | 2.214 | 5.55 | 2.34 | 1.6 | 98.3 | 0.1 | 2.02 | 0.78 | 0.75 | 3.53 | 1.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.01 | 0.00 | 2.104 | 7.16 | 1.53 | 1.8 | 98.1 | 0.1 | 1.87 | 0.57 | 0.82 | 0.81 | 3.91 | 38844 | 4984 | 21 | 0 | 16 | 0 | 0 | logfile |
✔ | 8CTE | 26988 | 2023-07-17 | 2022-05-14 | 2.9 | 1.86 | 2.80 | 1.5 | 0.003 | 0.53 | 1.0 | 0.04 | 11.34 | 0.00 | 2.214 | 5.55 | 2.34 | 1.6 | 98.3 | 0.1 | 2.02 | 0.78 | 0.75 | 3.53 | 1.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.01 | 0.00 | 2.104 | 7.16 | 1.53 | 1.8 | 98.1 | 0.1 | 1.87 | 0.57 | 0.82 | 0.81 | 3.91 | 38844 | 4984 | 21 | 0 | 16 | 0 | 0 | logfile |
✔ | 8CTE | 26988 | 2024-03-23 | 2022-05-14 | 2.9 | 1.86 | 2.80 | 1.5 | 0.003 | 0.53 | 1.0 | 0.04 | 11.90 | 0.00 | 2.214 | 5.55 | 2.34 | 1.6 | 98.3 | 0.1 | 2.02 | 0.78 | 0.75 | 3.53 | 1.4 | 0.004 | 0.57 | 0.0 | 0.04 | 14.62 | 0.00 | 2.070 | 7.41 | 1.85 | 2.0 | 98.0 | 0.1 | 1.82 | 0.56 | 0.82 | 0.81 | 3.86 | 38844 | 4984 | 21 | 0 | 16 | 0 | 0 | logfile |
✔ | 7VUH | 32128 | 2023-10-04 | 2021-11-02 | 3.22 | 2.19 | — | 1.9 | 0.004 | 0.66 | 0.0 | 0.04 | 13.59 | 0.00 | 2.099 | 13.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.87 | 0.71 | 0.69 | 2.81 | 1.4 | 0.005 | 0.70 | 0.0 | 0.04 | 15.83 | 0.00 | 2.031 | 14.94 | 0.11 | 6.0 | 94.0 | 0.0 | -1.28 | 0.38 | 0.72 | 0.73 | 2.42 | 8302 | 1042 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7K3V | 22657 | 2023-08-24 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.005 | 0.79 | 0.0 | 0.05 | 14.91 | 0.01 | 1.971 | 1.78 | 0.00 | 1.2 | 98.8 | 0.0 | 3.72 | 0.35 | 0.73 | 0.83 | 8.91 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 7T2G | 25612 | 2023-11-14 | 2021-12-04 | 2.5 | 1.71 | — | 1.4 | 0.007 | 0.88 | 0.0 | 0.05 | 12.30 | 0.01 | 2.214 | 13.39 | 1.00 | 3.5 | 96.5 | 0.0 | 0.61 | 0.80 | 0.81 | 5.15 | 1.4 | 0.003 | 0.56 | 0.0 | 0.04 | 15.24 | 0.00 | 2.152 | 11.11 | 1.43 | 2.1 | 97.9 | 0.0 | 0.87 | 0.38 | 0.80 | 0.80 | 4.35 | 6922 | 898 | 4 | 0 | 3 | 8 | 0 | logfile |
✔ | 7T2G | 25612 | 2023-12-08 | 2021-12-04 | 2.5 | 1.71 | — | 1.4 | 0.007 | 0.88 | 0.0 | 0.05 | 12.03 | 0.01 | 2.214 | 13.39 | 1.00 | 3.5 | 96.5 | 0.0 | 0.61 | 0.80 | 0.81 | 5.15 | 1.4 | 0.003 | 0.55 | 0.0 | 0.04 | 14.67 | 0.00 | 2.154 | 10.52 | 1.72 | 1.9 | 98.1 | 0.0 | 0.87 | 0.39 | 0.79 | 0.80 | 4.25 | 6922 | 898 | 4 | 0 | 3 | 8 | 0 | logfile |