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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JC7 | 6536 | 2023-07-18 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XZB | 10657 | 2023-07-19 | 2020-02-03 | 2.54 | 3.99 | — | 3.8 | 0.008 | 0.65 | 1.0 | 0.04 | 14.47 | 0.02 | 0.178 | 7.02 | 2.93 | 3.1 | 96.4 | 0.4 | -1.96 | 0.75 | 0.71 | 2.59 | 3.8 | 0.003 | 0.70 | 0.0 | 0.03 | 15.27 | 0.01 | 1.181 | 12.61 | 3.79 | 3.8 | 96.0 | 0.1 | -0.07 | 1.05 | 0.73 | 0.86 | 1.95 | 145650 | 5732 | 55 | 4692 | 1 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2023-07-12 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 1.504 | 15.88 | 0.44 | 11.4 | 88.3 | 0.3 | -1.95 | 1.49 | 0.83 | 0.81 | 1.30 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2023-07-13 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 18.67 | 0.02 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.013 | 0.93 | 0.0 | 0.04 | 18.90 | 0.01 | 1.977 | 36.16 | 0.35 | 15.8 | 84.1 | 0.1 | -3.77 | 2.58 | 0.92 | 0.79 | 0.35 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 7QGH | 13955 | 2023-07-23 | 2021-12-08 | 4.48 | 9.26 | — | 4.8 | 0.016 | 1.62 | 58.0 | 0.11 | 15.10 | 0.01 | 0.197 | 5.44 | 1.41 | 8.8 | 90.2 | 1.0 | -4.05 | 0.66 | 0.38 | — | 4.5 | 0.006 | 0.93 | 1.0 | 0.05 | 18.29 | 0.01 | 1.254 | 59.68 | 0.04 | 11.4 | 88.5 | 0.1 | -2.68 | 2.11 | 0.85 | 0.78 | — | 147973 | 6046 | 58 | 4716 | 3 | 9 | 0 | logfile |
✔ | 6FKi | 4272 | 2023-07-17 | 2018-01-24 | 4.3 | 4.39 | 4.31 | 4.3 | 0.015 | 1.42 | 28.0 | 0.09 | 11.86 | 0.01 | 0.201 | 58.71 | 0.15 | 3.9 | 96.0 | 0.1 | -0.17 | 0.63 | 0.65 | — | 4.3 | 0.007 | 0.94 | 9.0 | 0.06 | 13.87 | 0.01 | 1.403 | 24.57 | 0.05 | 4.3 | 95.6 | 0.1 | -0.38 | 1.28 | 0.69 | 0.78 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2023-07-07 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.15 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K3V | 22657 | 2023-07-17 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.005 | 0.79 | 0.0 | 0.05 | 14.91 | 0.01 | 1.971 | 1.78 | 0.00 | 1.2 | 98.8 | 0.0 | 3.72 | 0.35 | 0.73 | 0.83 | 8.91 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 3J9S | 6272 | 2023-07-05 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 17.43 | 0.00 | 1.145 | 9.20 | 1.43 | 1.5 | 98.5 | 0.0 | 1.37 | 1.90 | 0.70 | 0.89 | 3.19 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 3JBU | 6483 | 2023-07-17 | 2015-10-16 | 3.64 | 3.71 | — | 3.6 | 0.008 | 1.32 | 5.0 | 0.10 | 19.19 | 0.01 | 0.232 | 33.71 | 2.84 | 8.0 | 89.1 | 2.9 | -2.66 | 0.70 | 0.74 | 0.87 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 18.05 | 0.01 | 1.988 | 14.66 | 0.79 | 8.9 | 90.6 | 0.5 | -2.53 | 1.62 | 0.72 | 0.78 | 1.03 | 143334 | 5599 | 54 | 4638 | 0 | 0 | 0 | logfile |
✔ | 6V4J | 21041 | 2023-07-13 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.47 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.003 | 0.81 | 0.0 | 0.04 | 16.33 | 0.00 | 2.100 | 13.99 | 3.48 | 4.6 | 95.4 | 0.0 | -1.07 | 1.53 | 0.48 | 0.50 | 1.34 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-07-11 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✔ | 5FYW | 3378 | 2023-07-18 | 2016-03-10 | 4.35 | 4.82 | — | 4.3 | 0.010 | 1.14 | 2.0 | 0.07 | 12.79 | 0.01 | 0.245 | 17.00 | 0.77 | 5.4 | 94.1 | 0.5 | -2.84 | 0.80 | 0.75 | — | 4.3 | 0.004 | 0.73 | 0.0 | 0.04 | 14.43 | 0.00 | 1.973 | 19.09 | 0.02 | 6.2 | 93.6 | 0.2 | 0.12 | 2.89 | 0.83 | 0.81 | — | 41710 | 5176 | 30 | 94 | 11 | 0 | 0 | logfile |
✔ | 6ZXD | 11517 | 2023-07-14 | 2020-07-29 | 3.2 | 3.08 | 3.17 | 3.1 | 0.007 | 0.94 | 0.0 | 0.05 | 16.74 | 0.01 | 0.254 | 5.75 | 0.21 | 7.2 | 92.6 | 0.2 | -3.93 | 0.76 | 0.76 | 2.67 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 16.98 | 0.00 | 2.050 | 8.76 | 0.26 | 4.6 | 95.3 | 0.1 | -0.81 | 0.50 | 0.76 | 0.78 | 2.02 | 80922 | 5944 | 39 | 1645 | 2 | 0 | 0 | logfile |
✔ | 6G51 | 4350 | 2023-07-20 | 2018-03-28 | 4.1 | 4.42 | — | 4.0 | 0.007 | 1.44 | 22.0 | 0.10 | 21.21 | 0.00 | 0.264 | 3.79 | 0.00 | 7.0 | 92.3 | 0.8 | -2.90 | 0.71 | 0.63 | — | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 22.63 | 0.00 | 1.977 | 12.39 | 0.00 | 13.4 | 86.5 | 0.1 | -2.16 | 1.66 | 0.81 | 0.69 | — | 50662 | 6237 | 38 | 1659 | 0 | 0 | 0 | logfile |
✔ | 6CB1 | 7445 | 2023-07-10 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 16.94 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.78 | 0.0 | 0.04 | 17.69 | 0.00 | 2.044 | 20.20 | 0.00 | 8.1 | 91.9 | 0.0 | -1.18 | 1.99 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 8SEW | 40431 | 2023-07-10 | 2023-04-10 | 2.89 | 2.97 | 2.87 | 3.0 | 0.004 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 0.267 | 5.77 | 2.14 | 2.1 | 97.7 | 0.2 | 1.93 | 0.60 | 0.79 | 2.44 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.35 | 0.00 | 2.215 | 6.47 | 1.20 | 1.6 | 98.2 | 0.2 | 1.93 | 0.57 | 0.61 | 0.81 | 2.28 | 20716 | 2516 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2023-07-16 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 17.23 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 17.58 | 0.00 | 1.847 | 11.83 | 4.43 | 6.7 | 93.3 | 0.0 | -1.89 | 0.66 | 0.78 | 0.85 | 2.33 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |
✔ | 8EEP | 28054 | 2023-07-04 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 12.36 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.030 | 1.63 | 0.0 | 0.12 | 16.78 | 0.01 | 2.001 | 9.57 | 1.36 | 0.6 | 99.4 | 0.0 | 1.73 | 1.37 | 0.74 | 0.81 | 3.61 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6SMH | 10235 | 2023-07-18 | 2019-08-21 | 4.3 | 4.36 | — | 4.3 | 0.009 | 1.33 | 2.0 | 0.07 | 17.19 | 0.04 | 0.292 | 54.32 | 14.61 | 12.0 | 85.8 | 2.2 | -4.97 | 0.68 | 0.79 | — | 4.3 | 0.004 | 0.82 | 0.0 | 0.05 | 14.18 | 0.00 | 2.078 | 19.52 | 0.15 | 10.1 | 89.6 | 0.4 | -2.15 | 2.72 | 0.68 | 0.80 | — | 39744 | 5025 | 16 | 0 | 0 | 0 | 0 | logfile |