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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ZYA | 6915 | 2023-07-08 | 2018-05-23 | 3.95 | 4.18 | — | 4.1 | 0.009 | 1.35 | 0.0 | 0.16 | 11.24 | 0.01 | 1.673 | 8.53 | 0.32 | 9.6 | 90.4 | 0.0 | -4.57 | 0.67 | 0.52 | 0.10 | 4.0 | 0.004 | 0.93 | 0.0 | 0.06 | 15.44 | 0.00 | 2.070 | 18.03 | 0.70 | 7.4 | 92.6 | 0.0 | -1.92 | 1.82 | 0.77 | 0.72 | 0.97 | 16957 | 2143 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 6iJo | 9680 | 2023-07-20 | 2018-10-10 | 3.3 | 3.39 | — | 3.3 | 0.021 | 2.10 | 0.0 | 0.26 | 19.20 | 0.01 | 2.074 | 9.07 | 0.41 | 7.6 | 92.4 | 0.0 | -4.92 | 0.65 | 0.79 | 3.27 | 3.3 | 0.003 | 0.93 | 0.0 | 0.05 | 18.78 | 0.00 | 2.081 | 17.43 | 0.41 | 5.6 | 94.4 | 0.0 | -0.38 | 1.60 | 0.66 | 0.81 | 2.26 | 49685 | 4382 | 41 | 0 | 333 | 0 | 0 | logfile |
✔ | 7DY6 | 30914 | 2023-07-16 | 2021-01-20 | 3.68 | 3.78 | — | 3.7 | 0.009 | 0.82 | 0.0 | 0.05 | 18.87 | 0.00 | 1.999 | 35.57 | 13.76 | 14.4 | 85.6 | 0.0 | -5.99 | 0.73 | 0.84 | 1.74 | 3.7 | 0.002 | 0.55 | 0.0 | 0.04 | 18.72 | 0.00 | 1.923 | 39.23 | 0.20 | 6.5 | 93.5 | 0.0 | -2.99 | 2.71 | 0.72 | 0.82 | 1.43 | 35762 | 4187 | 12 | 111 | 3 | 0 | 532 | logfile |
✔ | 7TJZ | 25947 | 2023-07-10 | 2022-01-17 | 4.4 | 7.00 | 4.54 | 4.2 | 0.019 | 2.21 | 0.0 | 0.00 | 6.67 | 0.01 | 2.384 | 0.19 | 0.00 | 4.2 | 94.2 | 1.6 | -0.41 | 0.58 | 0.63 | — | 4.2 | 0.017 | 1.19 | 0.0 | 0.00 | 6.51 | 0.01 | 2.047 | 16.64 | 0.00 | 13.2 | 86.4 | 0.3 | -1.19 | 0.80 | 0.82 | 0.83 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 5UZ7 | 8623 | 2023-07-04 | 2017-02-24 | 4.1 | 4.03 | — | 4.0 | 0.008 | 1.17 | 0.0 | 0.06 | 11.04 | 0.01 | 2.267 | 7.82 | 0.37 | 4.4 | 95.6 | 0.0 | -2.30 | 0.64 | 0.75 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 13.79 | 0.00 | 2.197 | 14.85 | 0.00 | 5.6 | 94.4 | 0.0 | -0.38 | 1.40 | 0.67 | 0.78 | — | 7643 | 974 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JNX | 9852 | 2023-07-15 | 2019-03-18 | 4.08 | 4.16 | — | 4.1 | 0.012 | 1.23 | 0.0 | 0.06 | 16.11 | 0.01 | 1.858 | 11.37 | 0.90 | 7.7 | 92.0 | 0.3 | -3.99 | 0.61 | 0.68 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.05 | 16.88 | 0.00 | 1.902 | 12.21 | 0.03 | 7.8 | 92.1 | 0.1 | -1.21 | 1.62 | 0.71 | 0.80 | — | 32639 | 3771 | 12 | 144 | 3 | 0 | 0 | logfile |
✔ | 6QNU | 4609 | 2023-07-04 | 2019-02-12 | 3.8 | 3.99 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.06 | 13.91 | 0.01 | 2.324 | 3.68 | 0.61 | 10.0 | 90.0 | 0.0 | -4.05 | 0.77 | 0.81 | 2.85 | 3.9 | 0.003 | 0.65 | 0.0 | 0.05 | 15.84 | 0.00 | 2.136 | 10.61 | 0.00 | 7.3 | 92.7 | 0.0 | -2.40 | 1.23 | 0.77 | 0.81 | 2.29 | 7250 | 920 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XJZ | 33238 | 2023-07-05 | 2022-04-19 | 3.9 | 4.23 | 3.91 | 4.0 | 0.004 | 0.59 | 0.0 | 0.04 | 12.64 | 0.00 | 2.218 | 6.48 | 3.13 | 4.2 | 95.8 | 0.0 | -1.22 | 0.83 | 0.84 | 1.97 | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 13.76 | 0.00 | 2.232 | 6.65 | 0.12 | 3.8 | 96.2 | 0.0 | -0.54 | 1.21 | 0.83 | 0.85 | 1.42 | 9276 | 983 | 2 | 72 | 1 | 0 | 0 | logfile |
✔ | 7CYE | 30498 | 2023-07-04 | 2020-09-03 | 3.54 | 3.31 | — | 3.7 | 0.010 | 1.42 | 0.0 | 0.07 | 12.31 | 0.01 | 2.232 | 4.09 | 1.30 | 12.4 | 87.0 | 0.6 | -7.38 | 0.56 | 0.76 | 2.20 | 3.7 | 0.003 | 0.89 | 0.0 | 0.04 | 14.85 | 0.01 | 2.091 | 7.04 | 0.26 | 10.5 | 89.5 | 0.0 | -2.91 | 0.86 | 0.60 | 0.81 | 2.82 | 7263 | 978 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RVY | 10018 | 2023-07-05 | 2019-06-03 | 4.13 | 4.25 | 4.04 | 4.1 | 0.006 | 1.03 | 0.0 | 0.06 | 14.69 | 0.01 | 2.290 | 6.87 | 0.49 | 7.5 | 92.5 | 0.0 | -5.00 | 0.64 | 0.81 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 13.23 | 0.00 | 2.369 | 10.92 | 0.00 | 5.0 | 95.0 | 0.0 | -0.04 | 0.72 | 0.64 | 0.80 | — | 9627 | 1290 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZYE | 11560 | 2023-07-06 | 2020-07-31 | 4.1 | 3.36 | 4.03 | 4.0 | 0.016 | 1.05 | 0.0 | 0.06 | 13.05 | 0.01 | 2.241 | 17.62 | 0.00 | 4.9 | 95.1 | 0.0 | -3.23 | 0.69 | 0.77 | — | 4.0 | 0.004 | 0.68 | 0.0 | 0.04 | 13.67 | 0.00 | 2.253 | 12.09 | 0.00 | 2.0 | 98.0 | 0.0 | 0.17 | 1.80 | 0.69 | 0.79 | — | 11592 | 1302 | 7 | 0 | 252 | 0 | 0 | logfile |
✔ | 7YoT | 33986 | 2023-07-06 | 2022-08-02 | 3.0 | 3.12 | 2.07 | 3.1 | 0.009 | 1.03 | 0.0 | 0.06 | 10.47 | 0.01 | 2.279 | 4.54 | 0.66 | 4.2 | 95.8 | 0.0 | -3.64 | 0.71 | 0.85 | 3.78 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 15.36 | 0.00 | 2.212 | 7.89 | 1.54 | 2.7 | 97.3 | 0.0 | 1.06 | 1.22 | 0.70 | 0.85 | 2.57 | 12182 | 1551 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BCT | 12143 | 2023-07-09 | 2020-12-21 | 3.37 | 3.33 | 3.31 | 3.4 | 0.009 | 1.15 | 0.0 | 0.15 | 13.35 | 0.01 | 2.299 | 4.43 | 0.00 | 5.7 | 94.3 | 0.0 | -0.74 | 0.51 | 0.67 | 2.81 | 3.4 | 0.003 | 0.78 | 0.0 | 0.16 | 14.81 | 0.00 | 2.004 | 10.10 | 0.29 | 5.7 | 94.3 | 0.0 | 1.11 | 0.79 | 0.54 | 0.74 | 2.48 | 20091 | 1326 | 3 | 0 | 0 | 0 | 10299 | logfile |
✔ | 7F75 | 31485 | 2023-07-12 | 2021-06-28 | 4.2 | 4.30 | — | 4.2 | 0.007 | 0.99 | 0.0 | 0.06 | 19.32 | 0.01 | 1.879 | 10.06 | 2.25 | 9.0 | 90.8 | 0.2 | -4.47 | 0.73 | 0.77 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.04 | 18.41 | 0.00 | 2.032 | 11.38 | 0.97 | 9.5 | 90.5 | 0.0 | -1.83 | 1.48 | 0.74 | 0.77 | — | 26887 | 3410 | 13 | 122 | 3 | 0 | 0 | logfile |
✔ | 6NF6 | 9361 | 2023-07-04 | 2018-12-18 | 3.32 | 3.42 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 15.65 | 0.01 | 2.309 | 4.98 | 0.00 | 4.5 | 95.2 | 0.3 | -2.74 | 0.54 | 0.79 | 2.76 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.58 | 0.00 | 2.296 | 12.04 | 0.41 | 5.0 | 95.0 | 0.0 | 2.23 | 0.53 | 0.55 | 0.80 | 2.34 | 6598 | 822 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7W57 | 32316 | 2023-07-09 | 2021-11-29 | 3.2 | 3.16 | — | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 11.44 | 0.00 | 1.990 | 3.69 | 0.20 | 2.0 | 98.0 | 0.0 | 0.67 | 0.63 | 0.79 | 3.55 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.47 | 0.00 | 2.008 | 7.65 | 0.20 | 2.5 | 97.5 | 0.0 | 1.27 | 1.30 | 0.64 | 0.83 | 3.33 | 18242 | 1159 | 6 | 0 | 0 | 0 | 9072 | logfile |
✔ | 6NZU | 0560 | 2023-07-10 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.014 | 0.88 | 0.0 | 0.06 | 14.42 | 0.01 | 2.057 | 2.18 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 15.90 | 0.00 | 2.232 | 6.86 | 0.22 | 5.0 | 95.0 | 0.0 | -1.59 | 0.55 | 0.70 | 0.84 | 3.12 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 7DWB | 30880 | 2023-07-11 | 2021-01-17 | 3.15 | 3.84 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.194 | 6.72 | 0.00 | 11.0 | 88.7 | 0.2 | -1.95 | 0.58 | 0.74 | 1.74 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.48 | 0.00 | 2.076 | 9.61 | 0.11 | 11.3 | 88.5 | 0.2 | -1.54 | 0.55 | 0.49 | 0.69 | 1.76 | 23464 | 2947 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BCQ | 12142 | 2023-07-09 | 2020-12-21 | 3.43 | 3.61 | 3.36 | 3.8 | 0.012 | 1.05 | 0.0 | 0.15 | 13.60 | 0.01 | 2.098 | 3.22 | 0.00 | 5.5 | 94.5 | 0.0 | -0.68 | 0.58 | 0.73 | 2.69 | 3.8 | 0.003 | 0.68 | 0.0 | 0.15 | 14.40 | 0.00 | 2.037 | 7.74 | 0.19 | 5.2 | 94.8 | 0.0 | 0.77 | 0.51 | 0.57 | 0.77 | 2.61 | 20160 | 1326 | 6 | 0 | 3 | 0 | 10299 | logfile |
✔ | 6FUW | 4225 | 2023-07-06 | 2018-02-28 | 3.07 | 3.17 | — | 3.2 | 0.010 | 0.98 | 0.0 | 0.06 | 10.27 | 0.01 | 2.193 | 10.90 | 0.00 | 11.8 | 88.2 | 0.0 | -4.10 | 0.72 | 0.81 | 4.71 | 3.2 | 0.002 | 0.60 | 0.0 | 0.04 | 14.89 | 0.00 | 2.109 | 8.09 | 0.07 | 5.5 | 94.5 | 0.0 | -1.41 | 1.63 | 0.72 | 0.82 | 3.25 | 13421 | 1665 | 5 | 8 | 3 | 0 | 0 | logfile |