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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DEP | 27394 | 2023-07-03 | 2022-06-21 | 3.6 | 4.01 | 3.65 | 3.8 | 0.008 | 0.76 | 0.0 | 0.07 | 13.59 | 0.01 | 2.197 | 5.44 | 0.65 | 0.5 | 99.5 | 0.0 | 3.03 | 0.47 | 0.78 | 1.93 | 3.9 | 0.003 | 0.62 | 0.0 | 0.03 | 16.80 | 0.00 | 2.214 | 7.84 | 0.32 | 1.5 | 98.5 | 0.0 | 2.16 | 0.65 | 0.46 | 0.77 | 1.68 | 3223 | 398 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 7D1T | 30547 | 2023-07-03 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✔ | 6X0U | 21984 | 2023-07-03 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.69 | 0.0 | 0.04 | 17.79 | 0.00 | 2.197 | 7.98 | 0.29 | 3.2 | 96.8 | 0.0 | 1.27 | 0.82 | 0.27 | 0.79 | 2.52 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoS | 20418 | 2023-07-03 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.58 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 13.00 | 0.00 | 1.937 | 10.02 | 0.03 | 3.3 | 96.7 | 0.0 | -0.01 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 8BGU | 16036 | 2023-07-03 | 2022-10-28 | 4.1 | 5.77 | 3.97 | 4.0 | 0.003 | 0.84 | 0.0 | 0.04 | 16.17 | 0.00 | 2.235 | 4.09 | 0.00 | 5.0 | 95.0 | 0.0 | -2.58 | 0.92 | 0.86 | — | 4.0 | 0.003 | 0.57 | 0.0 | 0.03 | 16.68 | 0.00 | 2.102 | 20.05 | 0.00 | 8.8 | 91.2 | 0.0 | -0.51 | 2.19 | 0.92 | 0.87 | — | 4779 | 447 | 5 | 121 | 1 | 0 | 0 | logfile |
✘ | 6Po1 | 20406 | 2023-07-03 | 2019-07-03 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53244 | 3407 | 20 | 0 | 18 | 0 | 26717 | logfile |
✔ | 7RTV | 24690 | 2023-07-03 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 14.21 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.91 | 0.0 | 0.04 | 16.58 | 0.00 | 2.168 | 18.02 | 0.32 | 3.3 | 96.7 | 0.0 | 2.73 | 1.76 | 0.41 | 0.64 | 0.28 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 8DHA | 27434 | 2023-07-03 | 2022-06-25 | 3.8 | 4.85 | 4.37 | 4.8 | 0.004 | 0.76 | 0.0 | 0.05 | 17.00 | 0.01 | 2.155 | 15.08 | 0.49 | 4.8 | 95.2 | 0.0 | 0.08 | 0.69 | 0.73 | 0.68 | 4.8 | 0.004 | 0.78 | 0.0 | 0.05 | 17.77 | 0.00 | 2.108 | 13.09 | 0.49 | 5.8 | 94.2 | 0.0 | -0.54 | 0.56 | 0.69 | 0.73 | 0.85 | 3510 | 439 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 7P16 | 13157 | 2023-07-03 | 2021-07-01 | 4.3 | 4.40 | 3.53 | 4.3 | 0.004 | 0.73 | 0.0 | 0.04 | 15.07 | 0.00 | 2.178 | 7.56 | 0.00 | 2.5 | 97.5 | 0.0 | -0.08 | 0.65 | 0.77 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 14.47 | 0.00 | 2.185 | 11.13 | 0.00 | 3.7 | 96.3 | 0.0 | 0.83 | 1.45 | 0.64 | 0.76 | — | 3621 | 444 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 6PoD | 20412 | 2023-07-03 | 2019-07-03 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53637 | 3427 | 20 | 0 | 25 | 0 | 26898 | logfile |
✔ | 6NT6 | 0503 | 2023-07-03 | 2019-01-28 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 11.99 | 0.01 | 2.316 | 3.70 | 0.00 | 3.8 | 96.2 | 0.0 | -3.32 | 0.69 | 0.80 | — | 4.1 | 0.002 | 0.72 | 0.0 | 0.04 | 15.61 | 0.00 | 2.295 | 7.27 | 0.00 | 2.7 | 97.3 | 0.0 | 1.43 | 1.19 | 0.69 | 0.80 | — | 4198 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SUF | 10313 | 2023-07-03 | 2019-09-13 | 3.4 | 3.32 | — | 3.3 | 0.021 | 1.77 | 6.0 | 0.10 | 10.78 | 0.01 | 2.186 | 1.73 | 0.00 | 2.4 | 97.3 | 0.3 | -0.46 | 0.80 | 0.80 | 2.93 | 3.3 | 0.004 | 0.66 | 1.0 | 0.04 | 14.92 | 0.00 | 1.996 | 10.75 | 0.15 | 4.0 | 96.0 | 0.0 | 0.49 | 1.32 | 0.82 | 0.84 | 2.61 | 108112 | 13607 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iWM | 35771 | 2023-07-03 | 2023-03-30 | 3.17 | 3.65 | 2.80 | 3.5 | 0.004 | 0.76 | 0.0 | 0.04 | 14.98 | 0.00 | 2.390 | 9.55 | 5.26 | 3.4 | 96.6 | 0.0 | -2.66 | 0.56 | 0.76 | 2.24 | 3.5 | 0.002 | 0.65 | 0.0 | 0.04 | 15.22 | 0.00 | 2.254 | 8.78 | 1.05 | 2.2 | 97.8 | 0.0 | 0.48 | 0.58 | 0.59 | 0.77 | 2.24 | 1980 | 271 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6UKN | 20807 | 2023-07-03 | 2019-10-05 | 3.65 | 3.85 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 13.77 | 0.01 | 2.280 | 4.10 | 0.47 | 7.7 | 92.3 | 0.0 | -2.59 | 0.70 | 0.82 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4109 | 536 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2023-07-03 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.61 | 0.0 | 0.07 | 15.67 | 0.02 | 1.977 | 4.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.95 | 0.0 | 0.05 | 22.46 | 0.01 | 1.737 | 49.85 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.79 | 0.66 | 0.81 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 7TX7 | 26156 | 2023-07-03 | 2022-02-07 | 3.8 | 4.02 | 3.76 | 3.9 | 0.008 | 0.76 | 0.0 | 0.07 | 12.94 | 0.00 | 2.072 | 6.28 | 0.00 | 1.8 | 98.2 | 0.0 | 3.77 | 0.44 | 0.74 | 1.59 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 16.58 | 0.00 | 2.219 | 9.34 | 0.33 | 2.5 | 97.5 | 0.0 | 2.15 | 1.32 | 0.46 | 0.75 | 1.83 | 3203 | 397 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-07-03 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 13.91 | 0.00 | 2.223 | 14.60 | 0.00 | 8.3 | 91.5 | 0.2 | -2.31 | 3.59 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXA | 28656 | 2023-07-03 | 2022-10-25 | 3.14 | 3.45 | 3.09 | 3.4 | 0.004 | 0.54 | 0.0 | 0.03 | 17.45 | 0.00 | 2.223 | 15.79 | 0.40 | 3.6 | 96.4 | 0.0 | 0.27 | 0.61 | 0.69 | 4.07 | 3.4 | 0.003 | 0.52 | 0.0 | 0.03 | 17.87 | 0.00 | 2.219 | 16.00 | 1.21 | 3.6 | 96.4 | 0.0 | 0.46 | 1.14 | 0.60 | 0.68 | 3.76 | 5539 | 341 | 4 | 139 | 0 | 0 | 0 | logfile |
✔ | 7VAD | 31837 | 2023-07-03 | 2021-08-29 | 3.41 | 4.00 | — | 3.9 | 0.002 | 0.59 | 0.0 | 0.04 | 13.01 | 0.01 | 2.227 | 8.39 | 0.00 | 7.1 | 92.9 | 0.0 | 0.34 | 0.64 | 0.76 | 1.49 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 16.16 | 0.00 | 2.118 | 14.59 | 1.08 | 8.1 | 91.9 | 0.0 | 0.14 | 0.78 | 0.62 | 0.81 | 2.30 | 5697 | 743 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VAE | 31838 | 2023-07-03 | 2021-08-29 | 3.55 | 4.03 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 13.73 | 0.01 | 2.212 | 11.73 | 0.00 | 7.5 | 92.5 | 0.0 | -0.15 | 0.62 | 0.76 | 2.31 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 16.07 | 0.00 | 2.106 | 17.12 | 0.62 | 7.8 | 92.2 | 0.0 | -0.31 | 0.72 | 0.58 | 0.77 | 1.74 | 5643 | 736 | 3 | 0 | 0 | 0 | 0 | logfile |