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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E55 | 27903 | 2023-07-06 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✘ | 6UMM | 20820 | 2023-07-11 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-07-09 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.005 | 0.87 | 0.0 | 0.04 | 19.17 | 0.01 | 1.949 | 36.81 | 0.45 | 21.6 | 77.1 | 1.3 | -5.19 | 1.94 | 0.80 | 0.66 | 0.50 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 7UHB | 26511 | 2023-07-03 | 2022-03-26 | 3.0 | 3.17 | 2.97 | 3.2 | 0.011 | 1.36 | 3.0 | 0.12 | 9.92 | 0.00 | 2.562 | 5.08 | 1.42 | 3.0 | 96.6 | 0.4 | -0.52 | 0.52 | 0.54 | -0.09 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.83 | 0.00 | 2.223 | 8.94 | 2.84 | 3.0 | 97.0 | 0.0 | 0.69 | 2.47 | 0.69 | 0.83 | 3.49 | 2141 | 270 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6SSJ | 10295 | 2023-07-19 | 2019-09-08 | 2.75 | 3.13 | — | 3.2 | 0.016 | 1.23 | 0.0 | 0.08 | 12.91 | 0.01 | 1.227 | 9.87 | 0.54 | 3.2 | 96.8 | 0.0 | -4.66 | 0.49 | 0.47 | -0.09 | 3.1 | 0.003 | 0.67 | 0.0 | 0.04 | 17.28 | 0.00 | 2.171 | 7.25 | 1.14 | 2.6 | 97.4 | 0.0 | 0.21 | 1.66 | 0.68 | 0.83 | 2.22 | 104100 | 13320 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2023-07-18 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.74 | 0.01 | 2.211 | 9.80 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✔ | 5MPP | 3538 | 2023-07-10 | 2016-12-17 | 3.9 | 4.03 | — | 4.1 | 0.009 | 1.02 | 0.0 | 0.06 | 14.77 | 0.01 | 2.456 | 7.21 | 5.00 | 5.3 | 94.7 | 0.0 | -3.86 | 0.58 | 0.49 | -0.06 | 4.0 | 0.005 | 0.80 | 0.0 | 0.05 | 17.63 | 0.00 | 2.099 | 14.65 | 1.10 | 4.5 | 95.5 | 0.0 | 0.11 | 3.91 | 0.82 | 0.86 | 0.81 | 70560 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-07-08 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 14.35 | 0.00 | 2.124 | 12.51 | 0.36 | 5.1 | 94.9 | 0.0 | -0.25 | 1.55 | 0.28 | 0.16 | 0.60 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 8GWG | 34312 | 2023-07-10 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 17.82 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.5 | 0.004 | 0.85 | 0.0 | 0.04 | 17.35 | 0.01 | 2.073 | 20.41 | 0.70 | 8.6 | 91.2 | 0.2 | -2.15 | 1.82 | 0.77 | 0.63 | 0.57 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 7R4Q | 14314 | 2023-07-20 | 2022-02-09 | 3.6 | 3.14 | — | 5.7 | 0.022 | 3.26 | 109.0 | 0.39 | 15.97 | 0.02 | 1.450 | 30.29 | 3.30 | 8.7 | 91.1 | 0.2 | -2.35 | 0.48 | 0.21 | -0.05 | 4.0 | 0.011 | 1.13 | 8.0 | 0.17 | 15.61 | 0.01 | 1.762 | 27.43 | 0.44 | 10.0 | 90.0 | 0.0 | -2.21 | 1.76 | 0.63 | 0.58 | 0.35 | 51420 | 3414 | 13 | 0 | 43 | 0 | 24182 | logfile |
✔ | 6SXA | 10337 | 2023-07-04 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.25 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.04 | 0.00 | 2.240 | 11.90 | 0.00 | 6.0 | 93.9 | 0.1 | -0.30 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2023-07-05 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.94 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.04 | 0.00 | 2.061 | 18.47 | 0.21 | 2.9 | 97.1 | 0.0 | 0.28 | 1.50 | 0.94 | 0.84 | 0.28 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-07-07 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.64 | 0.0 | 0.04 | 15.49 | 0.00 | 1.241 | 12.10 | 0.08 | 5.0 | 95.0 | 0.0 | -1.15 | 1.21 | 0.38 | 0.18 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7T3L | 25662 | 2023-07-20 | 2021-12-08 | 3.6 | 8.29 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 17.15 | 0.01 | 2.223 | 7.57 | 0.52 | 5.0 | 95.0 | 0.0 | -1.92 | 0.73 | 0.45 | -0.03 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 17.40 | 0.00 | 2.125 | 21.11 | 0.12 | 5.5 | 94.5 | 0.0 | 0.37 | 1.17 | 0.94 | 0.83 | -0.02 | 52219 | 6242 | 28 | 200 | 0 | 0 | 0 | logfile |
✔ | 7ASN | 11901 | 2023-07-13 | 2020-10-27 | 2.73 | 4.10 | — | 3.0 | 0.008 | 1.05 | 0.0 | 0.05 | 18.87 | 0.01 | 1.953 | 13.53 | 0.48 | 11.3 | 88.6 | 0.1 | -3.27 | 0.46 | 0.23 | -0.03 | 2.3 | 0.006 | 0.89 | 0.0 | 0.04 | 19.17 | 0.01 | 1.970 | 31.49 | 5.72 | 10.6 | 89.4 | 0.0 | -2.45 | 2.02 | 0.87 | 0.80 | 1.34 | 80694 | 2545 | 25 | 2848 | 0 | 0 | 0 | logfile |
✔ | 8HAo | 34598 | 2023-07-09 | 2022-10-26 | 3.76 | 3.06 | 3.49 | 3.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.90 | 0.00 | 1.785 | 5.73 | 0.40 | 2.9 | 96.9 | 0.2 | 1.91 | 0.58 | 0.52 | -0.03 | 3.8 | 0.004 | 0.87 | 0.0 | 0.05 | 17.30 | 0.00 | 2.050 | 18.94 | 0.80 | 4.4 | 95.6 | 0.1 | 0.27 | 1.23 | 0.65 | 0.69 | 0.83 | 18479 | 2314 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2023-07-16 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 15.48 | 0.01 | 1.028 | 4.81 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.004 | 0.76 | 0.0 | 0.04 | 17.44 | 0.01 | 2.017 | 29.39 | 0.93 | 7.9 | 92.0 | 0.1 | -1.69 | 1.82 | 0.93 | 0.87 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2023-07-17 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.79 | 0.0 | 0.04 | 15.60 | 0.00 | 2.128 | 23.73 | 0.29 | 6.5 | 93.5 | 0.0 | -0.63 | 2.08 | 0.50 | 0.55 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QWS | 14193 | 2023-07-13 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 14.64 | 0.00 | 2.011 | 9.44 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | 3.0 | 0.007 | 1.11 | 0.0 | 0.05 | 19.45 | 0.01 | 1.053 | 32.19 | 0.94 | 11.4 | 88.4 | 0.2 | -2.98 | 2.30 | 0.54 | 0.64 | 0.55 | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 7D58 | 30577 | 2023-07-18 | 2020-09-25 | 2.9 | 3.51 | — | 5.3 | 0.002 | 0.66 | 0.0 | 0.54 | 13.94 | 0.00 | 2.139 | 8.32 | 0.09 | 5.8 | 94.2 | 0.0 | -3.64 | 0.55 | 0.24 | -0.02 | 3.3 | 0.006 | 1.28 | 0.0 | 0.17 | 17.76 | 0.01 | 2.107 | 18.57 | 2.59 | 5.9 | 94.1 | 0.0 | -2.10 | 2.19 | 0.79 | 0.77 | 0.98 | 40568 | 4980 | 26 | 46 | 8 | 0 | 0 | logfile |